Browse Element(s) Details


Os.53473.1.S1_at

Description gb:AK072852.1
DB_XREF= gi:32982875
TID=Os.53473.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53473 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023138H13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023138H13, full insert sequence.
FL= gb:AK072852.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0546011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05420Os.20315.2.S1_at11/113+2656070..2661257MT-A70 family protein, expressed
LOC_Os03g05420Os.20315.1.S1_at11/113+2656070..2661257MT-A70 family protein, expressed
LOC_Os03g05430OsAffx.24979.1.S1_at11/113+2661418..2664542signal peptidase I family protein, putative, expressed
LOC_Os03g05440Os.56829.1.S1_at11/113+2664693..2667402expressed protein
LOC_Os03g05450OsAffx.3140.1.S1_at11/113+2674693..2675612expressed protein
LOC_Os03g05460Os.53473.1.S1_at11/113+2677884..2679521expressed protein
LOC_Os03g05470Os.18786.1.S1_at11/113+2686608..2689932Protein kinase domain containing protein, expressed
LOC_Os03g05480Os.25045.1.S1_at11/113+2692428..2695029Zinc finger, C2H2 type family protein, expressed
LOC_Os03g05490OsAffx.12739.1.S1_at11/113+2696842..2697438hypothetical protein
LOC_Os03g05500Os.7112.1.S1_at11/113+2702148..2702946expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53473.1.S1_at--647--791Chr03:2678459..2678483 (25 bp)
ATGGATTGCGAAATTCAGCCTGGAC
LOC_Os03g05460
Os.53473.1.S1_at--699--5151Chr03:2678434..2678458 (25 bp)
GCAACGGCCATGGTTCAGTCAGAGC
LOC_Os03g05460
Os.53473.1.S1_at--698--4391Chr03:2678407..2678431 (25 bp)
GCCAAGGTTCATTCAGAAGCTCACA
LOC_Os03g05460
Os.53473.1.S1_at--900--7651Chr03:2678368..2678392 (25 bp)
GGGATGTCCATAATTTCCGCACAGA
LOC_Os03g05460
Os.53473.1.S1_at--808--7451Chr03:2678302..2678326 (25 bp)
GTGTGCATTATACTTCTCCTGGGAA
LOC_Os03g05460
Os.53473.1.S1_at--995--6271Chr03:2678265..2678289 (25 bp)
GATGTTGCGGTTTTACCTGACACCA
LOC_Os03g05460
Os.53473.1.S1_at--629--6191Chr03:2678205..2678229 (25 bp)
GAGGAATTCACGCTTGTTCTCAAGA
LOC_Os03g05460
Os.53473.1.S1_at--68--1191Chr03:2678151..2678175 (25 bp)
AGTAGAATTCTAGCCCATGCCATGT
LOC_Os03g05460
Os.53473.1.S1_at--552--1491Chr03:2678102..2678126 (25 bp)
AGCAACTTTTCTTCACAATCTACTT
LOC_Os03g05460
Os.53473.1.S1_at--313--10511Chr03:2678047..2678071 (25 bp)
TTCACACTATTCTTTCTTCTAGGAC
LOC_Os03g05460
Os.53473.1.S1_at--373--5211Chr03:2677975..2677999 (25 bp)
GAATTGCTGCTCTATTCTTTTAAGA
LOC_Os03g05460
Target Sequence 
ATGGATTGCGAAATTCAGCCTGGACGCAACGGCCATGGTTCAGTCAGAGCAAGCCAAGGTTCATTCAGAAGCTCACAAGC
TGTAGCTAATGGGGATGTCCATAATTTCCGCACAGATTGGCTTAGGAATAAGGAATGCAAGATTGGCAGAAGCAGGAGTG
TGCATTATACTTCTCCTGGGAACTTGGATAACGGGATGTTGCGGTTTTACCTGACACCAATGAGAAGTGCAAGAACAGCG
AACAGGGGGAGGAGGAGGAATTCACGCTTGTTCTCAAGAGGACTTTTTGGCTTCATTTGAGTGGCTGAAGTAGAATTCTA
GCCCATGCCATGTGTTTTAGAAGATGGCAGCAGTAGAAGCAACTTTTCTTCACAATCTACTTGGTTTCTAAGGACTGGCA
ACATAGTAAGTTTTCACACTATTCTTTCTTCTAGGACATTGTTAAGTCCCAATTTAGAATCAGGAAGCTTCAGTATTAGT
TGCAGAATTGCTGCTCTATTCTTTTAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53473.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis