Browse Element(s) Details


Os.20315.1.S1_at

Description gb:AK070974.1
DB_XREF= gi:32980997
TID=Os.20315.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20315 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023070F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023070F02, full insert sequence.
FL= gb:AK070974.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0542011/11MT-A70 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05390Os.4707.1.S1_at11/113+2631062..2640812transmembrane protein, putative, expressed
LOC_Os03g05400NANA3+2643689..2645745retrotransposon protein, putative, unclassified
LOC_Os03g05410OsAffx.20100.3.S1_x_at11/113+2646612..2648111hypothetical protein
LOC_Os03g05410OsAffx.20100.3.S1_at11/113+2646612..2648111hypothetical protein
LOC_Os03g05410OsAffx.20100.1.S1_x_at7/113+2646612..2648111hypothetical protein
LOC_Os03g05410OsAffx.20100.2.S1_x_at3/113+2646612..2648111hypothetical protein
LOC_Os03g05420Os.20315.2.S1_at11/113+2656070..2661257MT-A70 family protein, expressed
LOC_Os03g05420Os.20315.1.S1_at11/113+2656070..2661257MT-A70 family protein, expressed
LOC_Os03g05430OsAffx.24979.1.S1_at11/113+2661418..2664542signal peptidase I family protein, putative, expressed
LOC_Os03g05440Os.56829.1.S1_at11/113+2664693..2667402expressed protein
LOC_Os03g05450OsAffx.3140.1.S1_at11/113+2674693..2675612expressed protein
LOC_Os03g05460Os.53473.1.S1_at11/113+2677884..2679521expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008757molecular_functionS-adenosylmethionine-dependent methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20315.1.S1_at--211--4511Chr03:2657575..2657599 (25 bp)
GCCGATGAACCAACCGATGGTATTG
LOC_Os03g05420
Os.20315.1.S1_at--972--4051Chr03:2657561..2657585 (25 bp)
CGATGGTATTGTTTCATATGTTCTA
LOC_Os03g05420
Os.20315.1.S1_at--856--731Chr03:2657544..2657568 (25 bp)
ATGTTCTATTCAAAGATGCTTCTTG
LOC_Os03g05420
Os.20315.1.S1_at--964--6331Chr03:2657530..2657554 (25 bp)
GATGCTTCTTGTTCTTCATATATGC
LOC_Os03g05420
Os.20315.1.S1_at--884--6731Chr03:2657520..2657544 (25 bp)
GTTCTTCATATATGCTTGTGTACTA
LOC_Os03g05420
Os.20315.1.S1_at--756--4931Chr03:2657507..2657531 (25 bp)
GCTTGTGTACTAGATTGCTTTGTGG
LOC_Os03g05420
Os.20315.1.S1_at--872--8111Chr03:2657477..2657501 (25 bp)
GGACTTTTAGTCTATGCCGTTGTTT
LOC_Os03g05420
Os.20315.1.S1_at--498--1151Chr03:2657469..2657493 (25 bp)
AGTCTATGCCGTTGTTTGTTGAGAA
LOC_Os03g05420
Os.20315.1.S1_at--660--10791Chr03:2657454..2657478 (25 bp)
TTGTTGAGAATGTCAGTATGTCACA
LOC_Os03g05420
Os.20315.1.S1_at--886--7091Chr03:2657435..2657459 (25 bp)
GTCACATTTGGTGCCTTTATGAATA
LOC_Os03g05420
Os.20315.1.S1_at--1062--5231Chr03:2657415..2657439 (25 bp)
GAATAATTATGTTCTTGTCGCTTCA
LOC_Os03g05420
Target Sequence 
GCCGATGAACCAACCGATGGTATTGTTTCATATGTTCTATTCAAAGATGCTTCTTGTTCTTCATATATGCTTGTGTACTA
GATTGCTTTGTGGAAGAAGGACTTTTAGTCTATGCCGTTGTTTGTTGAGAATGTCAGTATGTCACATTTGGTGCCTTTAT
GAATAATTATGTTCTTGTCGCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20315.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis