Browse Element(s) Details


Os.20315.2.S1_at

Description gb:AK063281.1
DB_XREF= gi:32973299
TID=Os.20315.2
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20315 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023070F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-C12, full insert sequence.
FL= gb:AK063281.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0542011/11MT-A70 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05390Os.4707.1.S1_at11/113+2631062..2640812transmembrane protein, putative, expressed
LOC_Os03g05400NANA3+2643689..2645745retrotransposon protein, putative, unclassified
LOC_Os03g05410OsAffx.20100.3.S1_x_at11/113+2646612..2648111hypothetical protein
LOC_Os03g05410OsAffx.20100.3.S1_at11/113+2646612..2648111hypothetical protein
LOC_Os03g05410OsAffx.20100.1.S1_x_at7/113+2646612..2648111hypothetical protein
LOC_Os03g05410OsAffx.20100.2.S1_x_at3/113+2646612..2648111hypothetical protein
LOC_Os03g05420Os.20315.2.S1_at11/113+2656070..2661257MT-A70 family protein, expressed
LOC_Os03g05420Os.20315.1.S1_at11/113+2656070..2661257MT-A70 family protein, expressed
LOC_Os03g05430OsAffx.24979.1.S1_at11/113+2661418..2664542signal peptidase I family protein, putative, expressed
LOC_Os03g05440Os.56829.1.S1_at11/113+2664693..2667402expressed protein
LOC_Os03g05450OsAffx.3140.1.S1_at11/113+2674693..2675612expressed protein
LOC_Os03g05460Os.53473.1.S1_at11/113+2677884..2679521expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008757molecular_functionS-adenosylmethionine-dependent methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20315.2.S1_at--445--10051Chr03:2656540..2656564 (25 bp)
TAGATTTAATGCCTCACGTTGCCTC
LOC_Os03g05420
Os.20315.2.S1_at--985--9651Chr03:2656527..2656551 (25 bp)
TCACGTTGCCTCTTGTTTAACCGAG
LOC_Os03g05420
Os.20315.2.S1_at--1060--7191Chr03:2656502..2656526 (25 bp)
GTCGTGTAGATTTTCAGTCTCGCAG
LOC_Os03g05420
Os.20315.2.S1_at--849--3411Chr03:2656480..2656504 (25 bp)
CAGAATGAATGCTTTGCCGTGGTAC
LOC_Os03g05420
Os.20315.2.S1_at--318--10691Chr03:2656388..2656412 (25 bp)
TTGCCTTGTTGGTACATCGGTCACA
LOC_Os03g05420
Os.20315.2.S1_at--448--8931Chr03:2656343..2656367 (25 bp)
TGACGTCCTGTTTTTGTTTGCCGAT
LOC_Os03g05420
Os.20315.2.S1_at--912--7011Chr03:2656314..2656338 (25 bp)
GTACTATCATGGTCGTTTTCCTTGC
LOC_Os03g05420
Os.20315.2.S1_at--679--631Chr03:2656272..2656296 (25 bp)
ATGCTACCTGCATTTGTTTTTTCCG
LOC_Os03g05420
Os.20315.2.S1_at--18--5571Chr03:2656225..2656249 (25 bp)
GAAAGTTCTCTGTACCAGCTTTTTT
LOC_Os03g05420
Os.20315.2.S1_at--31--951Chr03:2656136..2656160 (25 bp)
AGGAATGAAGCCCAGGTCCCATGAA
LOC_Os03g05420
Os.20315.2.S1_at--747--6191Chr03:2656084..2656108 (25 bp)
GAGGAATTTTCGAGGCCATGCAAAC
LOC_Os03g05420
Target Sequence 
TAGATTTAATGCCTCACGTTGCCTCTTGTTTAACCGAGGTCGTGTAGATTTTCAGTCTCGCAGAATGAATGCTTTGCCGT
GGTACGGCTCGAACAAGATGGTTCAGCTTACAGCAATTTGACAGCTCTATTTCAAAGAAAATCATTCAGTATTTGCCTTG
TTGGTACATCGGTCACATATAAAGTCACTTTTATCATTGACGTCCTGTTTTTGTTTGCCGATGGTAGTACTATCATGGTC
GTTTTCCTTGCTGCTGGAGCCTGGAAGTATGCTACCTGCATTTGTTTTTTCCGTCCGAAAGGGGCGGAAGAAACTGAAAG
TTCTCTGTACCAGCTTTTTTAGTCTAGATGCAAACTGTGGTTGGAACACGATCTGTCTTCCCAGCTTACACTGGTGATAA
GATCAGGAATGAAGCCCAGGTCCCATGAACCTATAACACATTTTTATATGCATTTCGAGGAATTTTCGAGGCCATGCAAA
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20315.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis