Browse Element(s) Details


OsAffx.27192.1.S1_x_at

Description tigr:9633.m03348
TID=OsAffx.27192.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3592011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35860NANA5+21189519..21194570retrotransposon protein, putative, unclassified
LOC_Os05g35870NANA5+21196280..21196808hypothetical protein
LOC_Os05g35880Os.47463.1.S1_x_at5/115+21197909..21201607transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g35880Os.14491.2.S1_x_at5/115+21197909..21201607transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g35890NANA5+21204195..21207526transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g35900OsAffx.4537.1.S1_at10/115+21208886..21209377hypothetical protein
LOC_Os05g35910NANA5+21211761..21212559hypothetical protein
LOC_Os05g35920OsAffx.27192.1.S1_x_at11/115+21213580..21214003hypothetical protein
LOC_Os05g35930NANA5+21217261..21218032expressed protein
LOC_Os05g35940OsAffx.27194.1.S1_at11/115+21221263..21221565hypothetical protein
LOC_Os05g35950OsAffx.14978.1.S1_at11/115+21222914..21224000hypothetical protein
LOC_Os05g35950OsAffx.27186.1.S1_at1/115+21222914..21224000hypothetical protein
LOC_Os05g35960OsAffx.14979.1.S1_at11/115+21228377..21229313hypothetical protein
LOC_Os05g35970Os.49636.1.S1_at11/115+21230060..21230874expressed protein
LOC_Os05g35980Os.11957.1.S1_at11/115+21232644..21237274expressed protein
LOC_Os05g35980Os.54692.1.S1_at11/115+21232644..21237274expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27192.1.S1_x_at--613--5931Chr05:21213926..21213950 (25 bp)
GAGCAGCCGGCCAAGAGGAGCAAAC
LOC_Os05g35920
OsAffx.27192.1.S1_x_at--341--1511Chr05:21213925..21213949 (25 bp)
AGCAGCCGGCCAAGAGGAGCAAACG
LOC_Os05g35920
OsAffx.27192.1.S1_x_at--512--3231Chr05:21213915..21213939 (25 bp)
CAAGAGGAGCAAACGGCCAAGAGGA
LOC_Os05g35920
OsAffx.27192.1.S1_x_at--771--6171Chr05:21213840..21213864 (25 bp)
GAGGAGAAGCCGACAGTGGCGGCAG
LOC_Os05g35920
OsAffx.27192.1.S1_x_at--529--2131Chr05:21213828..21213852 (25 bp)
ACAGTGGCGGCAGCGCAGACAGCAC
LOC_Os05g35920
OsAffx.27192.1.S1_x_at--1155--4771Chr05:21213798..21213822 (25 bp)
GCTCCACTCCCAAAGCTGGACGGAA
LOC_Os05g35920
OsAffx.27192.1.S1_x_at--222--5231Chr05:21213768..21213792 (25 bp)
GAACCGGCCGACAGTGGCAAAGGCA
LOC_Os05g35920
OsAffx.27192.1.S1_x_at--278--1771Chr05:21213766..21213790 (25 bp)
ACCGGCCGACAGTGGCAAAGGCAGC
LOC_Os05g35920
OsAffx.27192.1.S1_x_at--102--4231Chr05:21213761..21213785 (25 bp)
CCGACAGTGGCAAAGGCAGCGCTCC
LOC_Os05g35920
OsAffx.27192.1.S1_x_at--1070--4091Chr05:21213760..21213784 (25 bp)
CGACAGTGGCAAAGGCAGCGCTCCC
LOC_Os05g35920
OsAffx.27192.1.S1_x_at--632--8531Chr05:21213622..21213728 (25 bp)
TGGAGAGCCGTCGGCGGGCCACGGA
LOC_Os05g35920
Target Sequence 
GAGCAGCCGGCCAAGAGGAGCAAACGGCCAAGAGGAGCGGCGGCGGCTCTGGGCACCAACTTCCTTCCCCCCAGACGCCG
GCGGCGGAGGAGAAGCCGACAGTGGCGGCAGCGCAGACAGCACCGGCCGCTCCACTCCCAAAGCTGGACGGAAGAGGGGA
ACCGGCCGACAGTGGCAAAGGCAGCGCTCCCCTCGCTCTCGGGCAGCGGCACCGGACGGAGGTGGAGAGCCGTCGGCGGG
CCACGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27192.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis