Browse Element(s) Details


OsAffx.26382.1.S1_at

Description tigr:9632.m03693
TID=OsAffx.26382.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Uncharacterised protein family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3906011/11CRS1/YhbY domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39040Os.5519.1.S1_at10/114+22966827..22971686UBX domain containing protein, expressed
LOC_Os04g39050Os.54556.1.S1_at11/114+22971841..22973132expressed protein
LOC_Os04g39060OsAffx.26382.1.S1_at11/114+22993048..22998986CRS1/YhbY domain containing protein, expressed
LOC_Os04g39060Os.54692.1.S1_at1/114+22993048..22998986CRS1/YhbY domain containing protein, expressed
LOC_Os04g39070OsAffx.4024.1.S1_at11/114+23000985..23002817F-box domain containing protein
LOC_Os04g39080Os.10790.1.A1_at11/114+23007093..23009134F-box domain containing protein, expressed
LOC_Os04g39090Os.17975.1.S1_x_at11/114+23009840..23015834SAM domain family protein, expressed
LOC_Os04g39090Os.17975.2.S1_at11/114+23009840..23015834SAM domain family protein, expressed
LOC_Os04g39100OsAffx.26383.1.S1_at11/114+23016909..23018081Peroxidase 65 precursor, putative, expressed
LOC_Os04g39110Os.46435.1.S1_s_at11/114+23023196..23024086Gibberellin regulated protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26382.1.S1_at--737--5391Chr04:22993648..22993672 (25 bp)
GAAGCATCCTCTTGCTATTGTGAAT
LOC_Os04g39060
OsAffx.26382.1.S1_at--181--5451Chr04:22993618..22993642 (25 bp)
GAACCGAGCAGACGGAACTCCAATT
LOC_Os04g39060
OsAffx.26382.1.S1_at--1034--2551Chr04:22993482..22993506 (25 bp)
AACTGGATCGGTTCTAGTGTCGCGG
LOC_Os04g39060
OsAffx.26382.1.S1_at--843--4131Chr04:22993462..22993486 (25 bp)
CGCGGGAGCCCAACAAAGTGATTTT
LOC_Os04g39060
OsAffx.26382.1.S1_at--281--7411Chr04:22993361..22993385 (25 bp)
GTGATATCACCTCAGCTCCTGGAAG
LOC_Os04g39060
OsAffx.26382.1.S1_at--44--5291Chr04:22993325..22993349 (25 bp)
GAATGTGGATTACACCCTGGTGAAT
LOC_Os04g39060
OsAffx.26382.1.S1_at--545--1251Chr04:22993248..22993272 (25 bp)
AGTTGGTGAAGTTGTGCTCGCGCCT
LOC_Os04g39060
OsAffx.26382.1.S1_at--230--2991Chr04:22993221..22993245 (25 bp)
AATGTCCAGATTGCGTTTTCCCTCG
LOC_Os04g39060
OsAffx.26382.1.S1_at--348--7211Chr04:22993197..22993221 (25 bp)
GTCGTTTCTGACCACAGTTTTCTGG
LOC_Os04g39060
OsAffx.26382.1.S1_at--828--6811Chr04:22993109..22993133 (25 bp)
GTTTTATCTGTAGTGTCTCCTTGTC
LOC_Os04g39060
OsAffx.26382.1.S1_at--863--10811Chr04:22993089..22993113 (25 bp)
TTGTCACCTTCCTTTGTAAATCTAA
LOC_Os04g39060
Target Sequence 
GAAGCATCCTCTTGCTATTGTGAATATCAAGAACCGAGCAGACGGAACTCCAATTCAGCAGTTGATTTCAGAACTAGAGG
AAGCAACTGGATCGGTTCTAGTGTCGCGGGAGCCCAACAAAGTGATTTTGTACAGGGGTTGGGGAGCAGATGTGGCCCAG
AATAGCTTAAGTGGAAATAATAGTACAGAACAAGTTGAAAAGGAGGTGATATCACCTCAGCTCCTGGAAGCCGTCAGATT
AGAATGTGGATTACACCCTGGTGAATCAGAGTAGATGGATCTCTAGATCCTGTAGATGGATTATCTTCATCGAATTGCAG
TTGGTGAAGTTGTGCTCGCGCCTTCAATGTCCAGATTGCGTTTTCCCTCGTCGTTTCTGACCACAGTTTTCTGGTTGGCC
TCCTCTTGACACAGCCCGTTGACGCGCTGTTCAAATTGGAATGTAGACACGAACATTGTTTTATCTGTAGTGTCTCCTTG
TCACCTTCCTTTGTAAATCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26382.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis