Browse Element(s) Details


OsAffx.26383.1.S1_at

Description tigr:9632.m03698
TID=OsAffx.26383.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=peroxidase ATP26a
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3910011/11Peroxidase 65 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39060OsAffx.26382.1.S1_at11/114+22993048..22998986CRS1/YhbY domain containing protein, expressed
LOC_Os04g39060Os.54692.1.S1_at1/114+22993048..22998986CRS1/YhbY domain containing protein, expressed
LOC_Os04g39070OsAffx.4024.1.S1_at11/114+23000985..23002817F-box domain containing protein
LOC_Os04g39080Os.10790.1.A1_at11/114+23007093..23009134F-box domain containing protein, expressed
LOC_Os04g39090Os.17975.1.S1_x_at11/114+23009840..23015834SAM domain family protein, expressed
LOC_Os04g39090Os.17975.2.S1_at11/114+23009840..23015834SAM domain family protein, expressed
LOC_Os04g39100OsAffx.26383.1.S1_at11/114+23016909..23018081Peroxidase 65 precursor, putative, expressed
LOC_Os04g39110Os.46435.1.S1_s_at11/114+23023196..23024086Gibberellin regulated protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26383.1.S1_at--529--5831Chr04:23017542..23017566 (25 bp)
GACCTCGTGGGCATCCTCGGCGGGC
LOC_Os04g39100
OsAffx.26383.1.S1_at--58--8351Chr04:23017316..23017340 (25 bp)
GGCTGTACAGCTTCAGGAGCGCCGA
LOC_Os04g39100
OsAffx.26383.1.S1_at--3--2151Chr04:23017310..23017334 (25 bp)
ACAGCTTCAGGAGCGCCGACGGGTA
LOC_Os04g39100
OsAffx.26383.1.S1_at--1127--10511Chr04:23017305..23017329 (25 bp)
TTCAGGAGCGCCGACGGGTACGACC
LOC_Os04g39100
OsAffx.26383.1.S1_at--759--9551Chr04:23017205..23017229 (25 bp)
TCTTCAACGACATCATGACACCGGG
LOC_Os04g39100
OsAffx.26383.1.S1_at--818--2571Chr04:23017200..23017224 (25 bp)
AACGACATCATGACACCGGGCAAGT
LOC_Os04g39100
OsAffx.26383.1.S1_at--1034--5651Chr04:23017197..23017221 (25 bp)
GACATCATGACACCGGGCAAGTTCG
LOC_Os04g39100
OsAffx.26383.1.S1_at--1162--10491Chr04:23017176..23017200 (25 bp)
TTCGACGAGGTCTACTTCAAGAACC
LOC_Os04g39100
OsAffx.26383.1.S1_at--694--1871Chr04:23017095..23017119 (25 bp)
ACGAGGGTGTTCGTCCAGCGCTACG
LOC_Os04g39100
OsAffx.26383.1.S1_at--638--5591Chr04:23017068..23017092 (25 bp)
GACAACCGGACGGCCTTCTTCGAGG
LOC_Os04g39100
OsAffx.26383.1.S1_at--313--7191Chr04:23017011..23017035 (25 bp)
GTCGGCGTCAAGACTGGCCGCCAGG
LOC_Os04g39100
Target Sequence 
GACCTCGTGGGCATCCTCGGCGGGCCCCGGTTCCCCGTCGCGCTGGGCCGCCGCGACGCGCGCCGGTCCGACGCGCGCGA
CGTCGAGGGGAACCTCCCGCGCACCAACATGTCCGCGCGCGCCATGGCGGTGCTGTTCGCGCGCAAGGGGTTCACGCCGC
GGGAGCTCGTGGCGCTCGCCGGCGCGCACACCGTGGGGTTCTCCCACTGCGGCGAGTTCGCGCACAGGCTGTACAGCTTC
AGGAGCGCCGACGGGTACGACCCGTCGCTGAACCCGGCGTTCGCGCGCGCGCTGCAGAGCTCCTGCGCCAACTACAGGAG
CGACCCGACCATCTCCATCTTCAACGACATCATGACACCGGGCAAGTTCGACGAGGTCTACTTCAAGAACCTGCCGCGCG
GGCTCGGCCTGCTCGCCTCCGACGCCGCGCTGTGGGAGTACCCGGCGACGAGGGTGTTCGTCCAGCGCTACGCCGACAAC
CGGACGGCCTTCTTCGAGGACTTCGCCGCGGCGATGCAGAAGCTCGGCGCCGTCGGCGTCAAGACTGGCCGCCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26383.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis