Browse Element(s) Details


Os.54556.1.S1_at

Description gb:AK105634.1
DB_XREF= gi:32990843
TID=Os.54556.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.54556 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-200-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-200-D09, full insert sequence.
FL= gb:AK105634.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3905011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39010Os.50287.1.S1_at11/114+22946455..22947228heavy metal-associated domain containing protein, expressed
LOC_Os04g39020Os.26839.1.S1_at11/114+22952409..22957231Betaine-aldehyde dehydrogenase, putative, expressed
LOC_Os04g39030OsAffx.4023.1.S1_x_at11/114+22959561..22963756POT family protein
LOC_Os04g39030Os.22928.1.S1_x_at1/114+22959561..22963756POT family protein
LOC_Os04g39040Os.5519.1.S1_at10/114+22966827..22971686UBX domain containing protein, expressed
LOC_Os04g39050Os.54556.1.S1_at11/114+22971841..22973132expressed protein
LOC_Os04g39060OsAffx.26382.1.S1_at11/114+22993048..22998986CRS1/YhbY domain containing protein, expressed
LOC_Os04g39060Os.54692.1.S1_at1/114+22993048..22998986CRS1/YhbY domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005739cellular_componentmitochondrion
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54556.1.S1_at--193--4051Chr04:22972799..22972823 (25 bp)
CGATGAGCTGACGAGGAATTCCAAG
LOC_Os04g39050
Os.54556.1.S1_at--512--8111Chr04:22972859..22972883 (25 bp)
GGACTCCAGTGCTTGCCGTTGAATG
LOC_Os04g39050
Os.54556.1.S1_at--514--811Chr04:22972881..22972905 (25 bp)
ATGGTGAATCGGTGATGTCGCACAC
LOC_Os04g39050
Os.54556.1.S1_at--683--3971Chr04:22972890..22972914 (25 bp)
CGGTGATGTCGCACACAAGGTGTTC
LOC_Os04g39050
Os.54556.1.S1_at--1106--8791Chr04:22972910..22972934 (25 bp)
TGTTCGTCCATTTGCTCCCGTGGAT
LOC_Os04g39050
Os.54556.1.S1_at--90--6371Chr04:22972932..22972956 (25 bp)
GATCCTTCCATCCAACAGAGGGAGT
LOC_Os04g39050
Os.54556.1.S1_at--964--7771Chr04:22972980..22973004 (25 bp)
GGTGCTTTGCCTGACCATTTCAAAA
LOC_Os04g39050
Os.54556.1.S1_at--941--2771Chr04:22973003..22973027 (25 bp)
AAGAGTACTCTTACACACGTAACAG
LOC_Os04g39050
Os.54556.1.S1_at--722--8731Chr04:22973035..22973059 (25 bp)
TGTACGGAAGATATCTGTTCAGATT
LOC_Os04g39050
Os.54556.1.S1_at--534--6751Chr04:22973051..22973075 (25 bp)
GTTCAGATTATTTGGACTGCCATTC
LOC_Os04g39050
Os.54556.1.S1_at--241--5731Chr04:22973065..22973089 (25 bp)
GACTGCCATTCGTTCGCATGAGATG
LOC_Os04g39050
Target Sequence 
CGATGAGCTGACGAGGAATTCCAAGGGGAAGCCATGGTGGAAGCTGGAATCGGATGGCGAGGACTCCAGTGCTTGCCGTT
GAATGGTGAATCGGTGATGTCGCACACAAGGTGTTCGTCCATTTGCTCCCGTGGATCCTTCCATCCAACAGAGGGAGTAC
TATCAACCAGGTTGGGGANNNNNNNNNNCCTGGTGCTTTGCCTGACCATTTCAAAAGAGTACTCTTACACACGTAACAGT
AGTAATTGTACGGAAGATATCTGTTCAGATTATTTGGACTGCCATTCGTTCGCATGAGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54556.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis