Browse Element(s) Details


Os.34174.1.S1_at

Description gb:AK072586.1
DB_XREF= gi:32982609
TID=Os.34174.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.34174 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023132E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023132E12, full insert sequence.
FL= gb:AK072586.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3879011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38770OsAffx.26379.1.S1_at11/114+22821096..22822421Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os04g38780NANA4+22826590..22829209K-box region family protein, expressed
LOC_Os04g38790Os.34174.1.S1_at11/114+22840341..22841839expressed protein
LOC_Os04g38790OsAffx.22650.1.S1_x_at1/114+22840341..22841839expressed protein
LOC_Os04g38800OsAffx.4019.1.S1_at11/114+22857765..22858310hypothetical protein
LOC_Os04g38810Os.54787.1.S1_at10/114+22859243..22862336Formin Homology 2 Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34174.1.S1_at--562--8671Chr04:22840906..22840930 (25 bp)
TGTGGGCTTGCGTTGCGCCGATCAA
LOC_Os04g38790
Os.34174.1.S1_at--299--7591Chr04:22840843..22840867 (25 bp)
GGGCATGCCTACGTGCAAGGTCGAC
LOC_Os04g38790
Os.34174.1.S1_at--601--7091Chr04:22840818..22840842 (25 bp)
GTCAAACTTGTTTTTAGCTTCTGCT
LOC_Os04g38790
Os.34174.1.S1_at--635--4911Chr04:22840802..22840826 (25 bp)
GCTTCTGCTATATTTCATCTTGTCG
LOC_Os04g38790
Os.34174.1.S1_at--996--3551Chr04:22840787..22840811 (25 bp)
CATCTTGTCGCGAGAGCCATGAGCT
LOC_Os04g38790
Os.34174.1.S1_at--706--1691Chr04:22840773..22840797 (25 bp)
AGCCATGAGCTCTGATGTGTGCGTT
LOC_Os04g38790
Os.34174.1.S1_at--186--6271Chr04:22840760..22840784 (25 bp)
GATGTGTGCGTTTCCATTGGCAATA
LOC_Os04g38790
Os.34174.1.S1_at--796--5091Chr04:22840710..22840734 (25 bp)
GCACCCACCATGTGTTGTCTATATA
LOC_Os04g38790
Os.34174.1.S1_at--453--9191Chr04:22840681..22840705 (25 bp)
TGCCTTTGCAACAGTGTCAGCCAGA
LOC_Os04g38790
Os.34174.1.S1_at--932--6151Chr04:22840631..22840655 (25 bp)
GAGGTTATGTCTTTCATCTGATGAG
LOC_Os04g38790
Os.34174.1.S1_at--645--3272Chr09:20248495..20248633 (25 bp)
CAAAATTTCATTGACCCGGCTTTGG
NONE
Target Sequence 
TGTGGGCTTGCGTTGCGCCGATCAAGCTAGCGCGTGCGTAGGAAGCGTAGCAAGCAGTAGGCAGGGCATGCCTACGTGCA
AGGTCGACGTCAAACTTGTTTTTAGCTTCTGCTATATTTCATCTTGTCGCGAGAGCCATGAGCTCTGATGTGTGCGTTTC
CATTGGCAATATTGTGTCGTCATCGCCCTCGGCCGGGCACCCACCATGTGTTGTCTATATATATGTGCCTTTGCAACAGT
GTCAGCCAGATTTGCGTGGGNTGTAAAAATTGCAAAGAGGTTATGTCTTTCATCTGATGAGTAGTAGCAGTAGTATGATG
CAGGCAATGTATTAAGACTACTGGATCAATATGTAGTATGTTTTATGATTTCAGTTAATAAGATGCTGGAGGCTTTTAGC
GNGAGGCTTACTCTCGCGTGTGTACTCTCTCTGTTCTAAAATAGATGAAATTAATACACACATCATACTATAAATCTACA
CAGATATCATATCTTGTACTAGTTTTTTTAAAACATATCAAAATTTCATTGACCCGGCTTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34174.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis