Browse Element(s) Details


OsAffx.26379.1.S1_at

Description tigr:9632.m03661
TID=OsAffx.26379.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SRF-type transcription factor (DNA-binding and dimerisation domain), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3877011/11Agamous-like MADS box protein AGL21, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38740OsAffx.24606.2.S1_at11/114+22804958..22807307Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g38740OsAffx.24606.2.S1_x_at11/114+22804958..22807307Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g38750Os.7714.1.S1_at11/114+22808289..22810012Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative, expressed
LOC_Os04g38760OsAffx.14195.1.S1_at11/114+22812991..22814888hypothetical protein
LOC_Os04g38770OsAffx.26379.1.S1_at11/114+22821096..22822421Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os04g38780NANA4+22826590..22829209K-box region family protein, expressed
LOC_Os04g38790Os.34174.1.S1_at11/114+22840341..22841839expressed protein
LOC_Os04g38790OsAffx.22650.1.S1_x_at1/114+22840341..22841839expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007584biological_processresponse to nutrient
GO:0009910biological_processnegative regulation of flower development
GO:0048527biological_processlateral root development
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26379.1.S1_at--141--3751Chr04:22821167..22821191 (25 bp)
CTCTTCTGGGAAACCTGGGAGCTTT
LOC_Os04g38770
OsAffx.26379.1.S1_at--593--3891Chr04:22821181..22821205 (25 bp)
CTGGGAGCTTTCTCCTTCAAGAGCT
LOC_Os04g38770
OsAffx.26379.1.S1_at--514--10511Chr04:22821196..22821220 (25 bp)
TTCAAGAGCTCCCTGCTAGCTAGAT
LOC_Os04g38770
OsAffx.26379.1.S1_at--7--9531Chr04:22821250..22821274 (25 bp)
TCTCTTTCTGTCCATTTCTATCTGT
LOC_Os04g38770
OsAffx.26379.1.S1_at--38--3591Chr04:22821262..22821286 (25 bp)
CATTTCTATCTGTGCTCTCGCCTGA
LOC_Os04g38770
OsAffx.26379.1.S1_at--436--4471Chr04:22821281..22821305 (25 bp)
GCCTGAGCGGCGACAATCCAGCTGA
LOC_Os04g38770
OsAffx.26379.1.S1_at--27--4711Chr04:22821287..22821311 (25 bp)
GCGGCGACAATCCAGCTGAGATCGA
LOC_Os04g38770
OsAffx.26379.1.S1_at--25--7591Chr04:22821331..22821355 (25 bp)
GGGCAAGATAGTGATCCGGCGGATC
LOC_Os04g38770
OsAffx.26379.1.S1_at--173--3411Chr04:22822233..22822257 (25 bp)
CAGCATGAAGTCAGTGATTGATCGA
LOC_Os04g38770
OsAffx.26379.1.S1_at--877--8811Chr04:22822247..22822271 (25 bp)
TGATTGATCGATATGGGCGAGCTAA
LOC_Os04g38770
OsAffx.26379.1.S1_at--16--1811Chr04:22822295..22822315 (21 bp)
ACCCCAACTCGGAGCTGAAGGAGTT
LOC_Os04g38770
Target Sequence 
CTCTTCTGGGAAACCTGGGAGCTTTCTCCTTCAAGAGCTCCCTGCTAGCTAGATCTCCTCCTCTCTTTCTCTCTCTCTCT
CTCTCTCTTTCTGTCCATTTCTATCTGTGCTCTCGCCTGAGCGGCGACAATCCAGCTGAGATCGATCGATCGATCGATGG
GGAGGGGCAAGATAGTGATCCGGCGGATCGACAACTCGACGAGCCGGCAGGTGACGTTCTCGAAGCGGCGCAACGGGATC
TTCAAGAAGGCCAAGGAGCTGGCCATCCTGTGCGACGCCGAGGTCGGCCTCGTCATCTTCTCCAGCACCGGCCGCCTCTA
CGAGTATGCCAGCACCAGCATGAAGTCAGTGATTGATCGATATGGGCGAGCTAAGGAGGAGCAGCAGCACGTCGCAAACC
CCAACTCGGAGCTGAAGGAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26379.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis