Browse Element(s) Details


Os.7714.1.S1_at

Description gb:AK068022.1
DB_XREF= gi:32978040
TID=Os.7714.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7714 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013130N24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013130N24, full insert sequence.
FL= gb:AK058660.1 gb:AK068022.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3875011/11Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38730OsAffx.14194.1.S1_at10/114+22782431..22784478hypothetical protein
LOC_Os04g38740OsAffx.24606.2.S1_at11/114+22804958..22807307Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g38740OsAffx.24606.2.S1_x_at11/114+22804958..22807307Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g38750Os.7714.1.S1_at11/114+22808289..22810012Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative, expressed
LOC_Os04g38760OsAffx.14195.1.S1_at11/114+22812991..22814888hypothetical protein
LOC_Os04g38770OsAffx.26379.1.S1_at11/114+22821096..22822421Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os04g38780NANA4+22826590..22829209K-box region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7714.1.S1_at--451--931Chr04:22809462..22809486 (25 bp)
AGGCAGGATCCAATGCTTGTTCTGA
LOC_Os04g38750
Os.7714.1.S1_at--101--10111Chr04:22809543..22809567 (25 bp)
TATGGCAGCATTCCGTTAAGCCCAT
LOC_Os04g38750
Os.7714.1.S1_at--3--3571Chr04:22809565..22809589 (25 bp)
CATACTACTTCTGGCCACGGAAAGA
LOC_Os04g38750
Os.7714.1.S1_at--221--8851Chr04:22809649..22809673 (25 bp)
TGATCATCCTTCTGAATCAGGCCAC
LOC_Os04g38750
Os.7714.1.S1_at--522--3491Chr04:22809666..22809690 (25 bp)
CAGGCCACTGATATCATCAACCTTT
LOC_Os04g38750
Os.7714.1.S1_at--55--7751Chr04:22809699..22809723 (25 bp)
GGTGGTGGCAGCTTGTCAACCTAAG
LOC_Os04g38750
Os.7714.1.S1_at--681--1331Chr04:22809722..22809746 (25 bp)
AGAGGATATCTCAATTCTCCCATCC
LOC_Os04g38750
Os.7714.1.S1_at--783--10531Chr04:22809768..22809792 (25 bp)
TTCTTGCTTTGGTTACACGGATCTT
LOC_Os04g38750
Os.7714.1.S1_at--292--6431Chr04:22809787..22809811 (25 bp)
GATCTTTGTTGTTACATGACCCTGT
LOC_Os04g38750
Os.7714.1.S1_at--935--5811Chr04:22809804..22809828 (25 bp)
GACCCTGTAGATCGATTCAAACTGT
LOC_Os04g38750
Os.7714.1.S1_at--738--8651Chr04:22809890..22809914 (25 bp)
TGGGCTCCATCATCCGCAGGGAAGA
LOC_Os04g38750
Target Sequence 
AGGCAGGATCCAATGCTTGTTCTGAAGTTCATATGGATGGAGAAGAACATTGGCATAGCCCTCGACCAGTTGGTTCCCGG
CTATGGCAGCATTCCGTTAAGCCCATACTACTTCTGGCCACGGAAAGATGCCTGGGAGGAGCTAAGAGCAAAGCTGGAGG
AGAAAGAGTGGATCTCTCAGAAACAGATGATCATCCTTCTGAATCAGGCCACTGATATCATCAACCTTTGGCAACAGGGT
GGTGGCAGCTTGTCAACCTAAGAGGATATCTCAATTCTCCCATCCTTGAGAACCTTGTTTCTTTTTTTCTTGCTTTGGTT
ACACGGATCTTTGTTGTTACATGACCCTGTAGATCGATTCAAACTGTTTTCGGATACGGTTTTGTTTATGGAAATGAATT
GTGATTGATCTCTGTAAGGTAAACGATTTGGGCTCCATCATCCGCAGGGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7714.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis