Browse Element(s) Details


OsAffx.14194.1.S1_at

Description tigr:9632.m03657
TID=OsAffx.14194.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3873010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38680Os.15621.1.S1_at11/114+22758757..22761274Transmembrane amino acid transporter protein, expressed
LOC_Os04g38690OsAffx.14193.1.S1_s_at11/114+22763316..22764500plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os04g38700Os.27741.1.S1_at11/114+22764690..22769235Molybdenum cofactor biosynthesis protein C, putative, expressed
LOC_Os04g38710OsAffx.4017.1.S1_at10/114+22772385..22774486hypothetical protein
LOC_Os04g38720Os.15708.1.S1_a_at11/114+22775498..22777550No apical meristem protein, expressed
LOC_Os04g38720Os.51926.1.S1_x_at1/114+22775498..22777550No apical meristem protein, expressed
LOC_Os04g38730OsAffx.14194.1.S1_at10/114+22782431..22784478hypothetical protein
LOC_Os04g38740OsAffx.24606.2.S1_at11/114+22804958..22807307Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g38740OsAffx.24606.2.S1_x_at11/114+22804958..22807307Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g38750Os.7714.1.S1_at11/114+22808289..22810012Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14194.1.S1_at--319--10831Chr04:22784239..22784263 (25 bp)
TTGGTTGTACAAGCATATTCCCCTT
LOC_Os04g38730
OsAffx.14194.1.S1_at--49--7451Chr04:22784139..22784163 (25 bp)
GTGTACATGCGGTATTCAGCTGCTA
LOC_Os04g38730
OsAffx.14194.1.S1_at--153--1611Chr04:22784122..22784146 (25 bp)
AGCTGCTAGTGTCAAATACTCCCTC
LOC_Os04g38730
OsAffx.14194.1.S1_at--275--7911NONE
GGTTGATGAACCTGACGCTGCCTTT
NONE
OsAffx.14194.1.S1_at--754--10371Chr04:22782571..22782595 (25 bp)
TTTTCTTTAGACAGGCCGCATAGGG
LOC_Os04g38730
OsAffx.14194.1.S1_at--1009--4931Chr04:22782554..22782578 (25 bp)
GCATAGGGCTTCTCACTCAATTAAT
LOC_Os04g38730
OsAffx.14194.1.S1_at--173--3331Chr04:22782541..22782565 (25 bp)
CACTCAATTAATGGGCCTGGCGTTT
LOC_Os04g38730
OsAffx.14194.1.S1_at--494--6831Chr04:22782520..22782544 (25 bp)
GTTTGCAAGGCCGAGATGCCGCATA
LOC_Os04g38730
OsAffx.14194.1.S1_at--298--851Chr04:22782496..22782520 (25 bp)
ATGGCAACAGGCTTATCTTCACTCT
LOC_Os04g38730
OsAffx.14194.1.S1_at--14--9571Chr04:22782481..22782505 (25 bp)
TCTTCACTCTTTAGATGGGCCTCAA
LOC_Os04g38730
OsAffx.14194.1.S1_at--1133--7551Chr04:22782465..22782489 (25 bp)
GGGCCTCAACAACGGTTCATCAGTA
LOC_Os04g38730
Target Sequence 
TTGGTTGTACAAGCATATTCCCCTTGTATATCATACTATATTCACAATGATTTTACTCCCAACTCGGAGAATCAAAGGGA
TGGAACGTGCACGTGCATACGTGTACATGCGGTATTCAGCTGCTAGTGTCAAATACTCCCTCTGTTTCATAACTCAAGTC
GTCGTTCGCTGCACGGACGCCGTGGCGCGCTGGCCTGGGGTAAAAGTGCAGCGGTACGAGTACGACCGAACGGTTGATGA
ACCTGACGCTGCCTTTTCTTTAGACAGGCCGCATAGGGCTTCTCACTCAATTAATGGGCCTGGCGTTTGCAAGGCCGAGA
TGCCGCATATGGCAACAGGCTTATCTTCACTCTTTAGATGGGCCTCAACAACGGTTCATCAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14194.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis