Browse Element(s) Details


Os.15708.1.S1_a_at

Description gb:AB028181.1
DB_XREF= gi:27529809
GEN=OsNAC2
TID=Os.15708.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15708 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for OsNAC2 protein, complete cds.
PROD=OsNAC2 protein
FL= gb:AK104626.1 gb:AK061745.1 gb:AB028181.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3872011/11No apical meristem protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38660OsAffx.26378.1.S1_at11/114+22750781..22751900amino acid transporter family protein, putative
LOC_Os04g38670OsAffx.14192.1.S1_at11/114+22752744..22753223amino acid transporter family protein, putative
LOC_Os04g38680Os.15621.1.S1_at11/114+22758757..22761274Transmembrane amino acid transporter protein, expressed
LOC_Os04g38690OsAffx.14193.1.S1_s_at11/114+22763316..22764500plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os04g38700Os.27741.1.S1_at11/114+22764690..22769235Molybdenum cofactor biosynthesis protein C, putative, expressed
LOC_Os04g38710OsAffx.4017.1.S1_at10/114+22772385..22774486hypothetical protein
LOC_Os04g38720Os.15708.1.S1_a_at11/114+22775498..22777550No apical meristem protein, expressed
LOC_Os04g38720Os.51926.1.S1_x_at1/114+22775498..22777550No apical meristem protein, expressed
LOC_Os04g38730OsAffx.14194.1.S1_at10/114+22782431..22784478hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0010072biological_processprimary shoot apical meristem specification
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15708.1.S1_a_at--826--8431Chr04:22776958..22776982 (25 bp)
GGCCAGTTCTTTAACCCGACGGCAG
LOC_Os04g38720
Os.15708.1.S1_a_at--1055--6711Chr04:22777014..22777038 (25 bp)
GTTCATGGCGAGCTTCACGCAGTAC
LOC_Os04g38720
Os.15708.1.S1_a_at--209--1951Chr04:22777052..22777076 (25 bp)
ACGGCGTGAGCCTGGTGCAACTCCT
LOC_Os04g38720
Os.15708.1.S1_a_at--275--2551Chr04:22777070..22777094 (25 bp)
AACTCCTGGAGAGCTGCAACGGCTA
LOC_Os04g38720
Os.15708.1.S1_a_at--1118--9251Chr04:22777228..22777252 (25 bp)
TCCGGCCAAAAATTCGACCACGAGG
LOC_Os04g38720
Os.15708.1.S1_a_at--1135--10771Chr04:22777276..22777300 (25 bp)
TTGATATGATCAGCGCCGTGTACGT
LOC_Os04g38720
Os.15708.1.S1_a_at--727--4231Chr04:22777291..22777315 (25 bp)
CCGTGTACGTTAATCGCGGGCGATT
LOC_Os04g38720
Os.15708.1.S1_a_at--744--6031Chr04:22777348..22777372 (25 bp)
GAGATCGCGATCGAGGCATCTACCA
LOC_Os04g38720
Os.15708.1.S1_a_at--1158--6191Chr04:22777360..22777384 (25 bp)
GAGGCATCTACCAAGGTTCGCTTAA
LOC_Os04g38720
Os.15708.1.S1_a_at--140--6711Chr04:22777375..22777399 (25 bp)
GTTCGCTTAATTTGCTTGTACCTAT
LOC_Os04g38720
Os.15708.1.S1_a_at--783--10051Chr04:22777493..22777517 (25 bp)
TAGTTAAGCAATTGGCCACTCCTCA
LOC_Os04g38720
Target Sequence 
GGCCAGTTCTTTAACCCGACGGCAGTACACGGGCACGGCGGCGGCGACTCCTCGCCGTTCATGGCGAGCTTCACGCAGTA
CGGGCAGCTGCACCACGGCGTGAGCCTGGTGCAACTCCTGGAGAGCTGCAACGGCTACGGCGGCCTCGTCGACATGGCAG
CGTCCGGCAGCCAGCTGCAGCCGGCGGCGTGCGGCGGCGAGCGGGAGAGGCTTAGCGCGTCGCAGGACACCGGCCTCACC
TCCGACGTGAACCCGGAGATCTCGTCATCCTCCGGCCAAAAATTCGACCACGAGGCCGCGCTATGGGGCTACTAAGGTTT
GATATGATCAGCGCCGTGTACGTTAATCGCGGGCGATTAGCGAAGTAGCGATTACTGTAAATAAAACCATGAGATCGCGA
TCGAGGCATCTACCAAGGTTCGCTTAATTTGCTTGTACCTATAGGTGTAGATTATTTGGTGATTTGGGAGATGTAATTAG
CATTGTTTGTTTGTAATTCGTATCAGAATGATCGATGCAGTATTGTTTGGAGGGTTAGTTAAGCAATTGGCCACTCCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15708.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis