Browse Element(s) Details


OsAffx.4017.1.S1_at

Description tigr:9632.m03655
TID=OsAffx.4017.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3871010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38660OsAffx.26378.1.S1_at11/114+22750781..22751900amino acid transporter family protein, putative
LOC_Os04g38670OsAffx.14192.1.S1_at11/114+22752744..22753223amino acid transporter family protein, putative
LOC_Os04g38680Os.15621.1.S1_at11/114+22758757..22761274Transmembrane amino acid transporter protein, expressed
LOC_Os04g38690OsAffx.14193.1.S1_s_at11/114+22763316..22764500plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os04g38700Os.27741.1.S1_at11/114+22764690..22769235Molybdenum cofactor biosynthesis protein C, putative, expressed
LOC_Os04g38710OsAffx.4017.1.S1_at10/114+22772385..22774486hypothetical protein
LOC_Os04g38720Os.15708.1.S1_a_at11/114+22775498..22777550No apical meristem protein, expressed
LOC_Os04g38720Os.51926.1.S1_x_at1/114+22775498..22777550No apical meristem protein, expressed
LOC_Os04g38730OsAffx.14194.1.S1_at10/114+22782431..22784478hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4017.1.S1_at--77--9551Chr04:22772443..22772467 (25 bp)
TCTTTCATTTTTTCCCGGTGGATGT
LOC_Os04g38710
OsAffx.4017.1.S1_at--63--8571Chr04:22772461..22772523 (25 bp)
TGGATGTGGACATCGACCGGCTCCT
LOC_Os04g38710
OsAffx.4017.1.S1_at--999--3931Chr04:22773580..22773603 (24 bp)
CGGCTCCTCCCATTTGTAGATAGAT
LOC_Os04g38710
OsAffx.4017.1.S1_at--13--6471Chr04:22773597..22773621 (25 bp)
GATAGATGCGGCTCTAGCTTTTTCA
LOC_Os04g38710
OsAffx.4017.1.S1_at--253--4811Chr04:22773607..22773631 (25 bp)
GCTCTAGCTTTTTCAAGTCCCTTGT
LOC_Os04g38710
OsAffx.4017.1.S1_at--476--2851NONE
AAGTCCCTTGTGTGGGCTGCAAAGA
NONE
OsAffx.4017.1.S1_at--751--1191Chr04:22774371..22774395 (25 bp)
AGTATCAGCCTGTGACCAATGTGCT
LOC_Os04g38710
OsAffx.4017.1.S1_at--1158--1691Chr04:22774385..22774409 (25 bp)
ACCAATGTGCTGTCACTGGGCTACA
LOC_Os04g38710
OsAffx.4017.1.S1_at--11--7111Chr04:22774396..22774420 (25 bp)
GTCACTGGGCTACAGGATCATCGTG
LOC_Os04g38710
OsAffx.4017.1.S1_at--593--7951Chr04:22774410..22774434 (25 bp)
GGATCATCGTGCCACTGCCAGTTTG
LOC_Os04g38710
OsAffx.4017.1.S1_at--732--1971Chr04:22774423..22774447 (25 bp)
ACTGCCAGTTTGTCACCGATTTGAT
LOC_Os04g38710
Target Sequence 
TCTTTCATTTTTTCCCGGTGGATGTGGACATCGACCGGCTCCTCCCATTTGTAGATAGATGCGGCTCTAGCTTTTTCAAG
TCCCTTGTGTGGGCTGCAAAGAGAACACAGTATCAGCCTGTGACCAATGTGCTGTCACTGGGCTACAGGATCATCGTGCC
ACTGCCAGTTTGTCACCGATTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4017.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis