Browse Element(s) Details


Os.15621.1.S1_at

Description gb:AK106202.1
DB_XREF= gi:32991411
TID=Os.15621.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.15621 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-208-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-208-F06, full insert sequence.
FL= gb:AK106202.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3868011/11Transmembrane amino acid transporter protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38640Os.17129.1.S1_at11/114+22735781..22741396Trypsin family protein, expressed
LOC_Os04g38650OsAffx.4016.1.S1_at11/114+22743108..22743726expressed protein
LOC_Os04g38660OsAffx.26378.1.S1_at11/114+22750781..22751900amino acid transporter family protein, putative
LOC_Os04g38670OsAffx.14192.1.S1_at11/114+22752744..22753223amino acid transporter family protein, putative
LOC_Os04g38680Os.15621.1.S1_at11/114+22758757..22761274Transmembrane amino acid transporter protein, expressed
LOC_Os04g38690OsAffx.14193.1.S1_s_at11/114+22763316..22764500plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os04g38700Os.27741.1.S1_at11/114+22764690..22769235Molybdenum cofactor biosynthesis protein C, putative, expressed
LOC_Os04g38710OsAffx.4017.1.S1_at10/114+22772385..22774486hypothetical protein
LOC_Os04g38720Os.15708.1.S1_a_at11/114+22775498..22777550No apical meristem protein, expressed
LOC_Os04g38720Os.51926.1.S1_x_at1/114+22775498..22777550No apical meristem protein, expressed
LOC_Os04g38730OsAffx.14194.1.S1_at10/114+22782431..22784478hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0016020cellular_componentmembrane
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15621.1.S1_at--470--2811Chr04:22760785..22760809 (25 bp)
AAGATCTTCGGCCTGACGCGATGCG
LOC_Os04g38680
Os.15621.1.S1_at--651--6431Chr04:22760838..22760862 (25 bp)
GATCATCGTGCTCGGTTCGTTGGTT
LOC_Os04g38680
Os.15621.1.S1_at--232--10151Chr04:22760857..22760881 (25 bp)
TTGGTTGCCGCGACGGGTACGTACT
LOC_Os04g38680
Os.15621.1.S1_at--516--3951Chr04:22760870..22760894 (25 bp)
CGGGTACGTACTCTTCTCTGAAGAA
LOC_Os04g38680
Os.15621.1.S1_at--848--8491Chr04:22760937..22760961 (25 bp)
TGGAAACACCGATGTCCGAATTTGT
LOC_Os04g38680
Os.15621.1.S1_at--305--6811Chr04:22760966..22760990 (25 bp)
GTTTTTGTAGCAACGCAATTCCGTA
LOC_Os04g38680
Os.15621.1.S1_at--703--91Chr04:22760983..22761007 (25 bp)
ATTCCGTAATGTACCTCAATGTCAG
LOC_Os04g38680
Os.15621.1.S1_at--950--1331Chr04:22761080..22761104 (25 bp)
AGAGTGCTTTAATTCGGGATCGTAA
LOC_Os04g38680
Os.15621.1.S1_at--399--3691Chr04:22761116..22761140 (25 bp)
CTATGGGAGCTATTGGCCTTGTATC
LOC_Os04g38680
Os.15621.1.S1_at--183--4451Chr04:22761131..22761155 (25 bp)
GCCTTGTATCTGTATCTCTGTTGTC
LOC_Os04g38680
Os.15621.1.S1_at--370--6931Chr04:22761194..22761218 (25 bp)
GTAGGATATCAGCACTCCATCTGAA
LOC_Os04g38680
Target Sequence 
AAGATCTTCGGCCTGACGCGATGCGGCAGGGGCGAGACCCTGCTGATCGCCGCGATCATCGTGCTCGGTTCGTTGGTTGC
CGCGACGGGTACGTACTCTTCTCTGAAGAAGATTTTCTATGAGTTTTGAAGTCAAGAGATGCACATTAGGCATGGAAACA
CCGATGTCCGAATTTGTGTACGTTTTTGTAGCAACGCAATTCCGTAATGTACCTCAATGTCAGCAGTCAGCAGAGTAATC
TGATTAAATCCTGAGATTCTGTAGTGGAGGCAAGGTAGTACAGATAACGAGGATTAGAGTGCTTTAATTCGGGATCGTAA
GTATGTTTGAGCTATGGGAGCTATTGGCCTTGTATCTGTATCTCTGTTGTCAGAAATAGTACAGTTAGTCAAAATGCCAA
ATGATATTTGTAGGATATCAGCACTCCATCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15621.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis