Browse Element(s) Details


OsAffx.4016.1.S1_at

Description tigr:9632.m03649
TID=OsAffx.4016.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3865011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38600Os.28203.1.S1_a_at11/114+22718006..22719956Glyceraldehyde-3-phosphate dehydrogenase A, chloroplast precursor, putative, expressed
LOC_Os04g38610Os.10386.1.S1_at10/114+22720341..22723231Ran-interacting Mob1 protein, expressed
LOC_Os04g38620Os.20447.1.S1_at11/114+22724123..22727814Nucleosome assembly protein containing protein, expressed
LOC_Os04g38630Os.6726.1.S1_x_at11/114+22728742..22732808Helicase conserved C-terminal domain containing protein, expressed
LOC_Os04g38630Os.6726.2.S1_at10/114+22728742..22732808Helicase conserved C-terminal domain containing protein, expressed
LOC_Os04g38640Os.17129.1.S1_at11/114+22735781..22741396Trypsin family protein, expressed
LOC_Os04g38650OsAffx.4016.1.S1_at11/114+22743108..22743726expressed protein
LOC_Os04g38660OsAffx.26378.1.S1_at11/114+22750781..22751900amino acid transporter family protein, putative
LOC_Os04g38670OsAffx.14192.1.S1_at11/114+22752744..22753223amino acid transporter family protein, putative
LOC_Os04g38680Os.15621.1.S1_at11/114+22758757..22761274Transmembrane amino acid transporter protein, expressed
LOC_Os04g38690OsAffx.14193.1.S1_s_at11/114+22763316..22764500plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os04g38700Os.27741.1.S1_at11/114+22764690..22769235Molybdenum cofactor biosynthesis protein C, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4016.1.S1_at--747--9531Chr04:22743157..22743181 (25 bp)
TCTTGGCCTCCTTTTCCGACGAGGT
LOC_Os04g38650
OsAffx.4016.1.S1_at--368--8451Chr04:22743160..22743184 (25 bp)
TGGCCTCCTTTTCCGACGAGGTTCT
LOC_Os04g38650
OsAffx.4016.1.S1_at--524--10371Chr04:22743168..22743192 (25 bp)
TTTTCCGACGAGGTTCTCGCCGTCA
LOC_Os04g38650
OsAffx.4016.1.S1_at--820--9291Chr04:22743171..22743195 (25 bp)
TCCGACGAGGTTCTCGCCGTCAGAA
LOC_Os04g38650
OsAffx.4016.1.S1_at--312--1371Chr04:22743242..22743266 (25 bp)
AGAGCGGCCGCGAGAGCTCGTGGAG
LOC_Os04g38650
OsAffx.4016.1.S1_at--642--1371Chr04:22743254..22743278 (25 bp)
AGAGCTCGTGGAGGGCGGCAATGCC
LOC_Os04g38650
OsAffx.4016.1.S1_at--651--4171Chr04:22743290..22743314 (25 bp)
CGCCACCTTTGACGCCTCCGTGAAG
LOC_Os04g38650
OsAffx.4016.1.S1_at--111--4791Chr04:22743343..22743367 (25 bp)
GCTCCTCTCCTTCGAAGGTGTTCGA
LOC_Os04g38650
OsAffx.4016.1.S1_at--1069--9291Chr04:22743348..22743372 (25 bp)
TCTCCTTCGAAGGTGTTCGACCCTG
LOC_Os04g38650
OsAffx.4016.1.S1_at--474--4111Chr04:22743355..22743379 (25 bp)
CGAAGGTGTTCGACCCTGACAGGAT
LOC_Os04g38650
OsAffx.4016.1.S1_at--1050--7411Chr04:22743360..22743384 (25 bp)
GTGTTCGACCCTGACAGGATGAGCA
LOC_Os04g38650
Target Sequence 
TCTTGGCCTCCTTTTCCGACGAGGTTCTCGCCGTCAGAACCCCGGCCGTGTTCGCCGCGAGTCGCCGGAGCGCCTCGCCA
CCAACAGAGCGGCCGCGAGAGCTCGTGGAGGGCGGCAATGCCGTCGCCGCCACCGCCACCTTTGACGCCTCCGTGAAGGC
CGCGGCGGCGACGGCGACGGCGACCGGCTCCTCTCCTTCGAAGGTGTTCGACCCTGACAGGATGAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4016.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis