Browse Element(s) Details


Os.10386.1.S1_at

Description gb:AK061516.1
DB_XREF= gi:32971534
TID=Os.10386.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10386 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-309-H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-309-H07, full insert sequence.
FL= gb:AK061516.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3861010/11Ran-interacting Mob1 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38570Os.48287.1.S1_at11/114+22695700..22702202multidrug resistance P-glycoprotein, putative, expressed
LOC_Os04g38580NANA4+22706530..22707312hypothetical protein
LOC_Os04g38590Os.55234.1.S1_s_at2/114+22710340..22710689hypothetical protein
LOC_Os04g38600Os.28203.1.S1_a_at11/114+22718006..22719956Glyceraldehyde-3-phosphate dehydrogenase A, chloroplast precursor, putative, expressed
LOC_Os04g38610Os.10386.1.S1_at10/114+22720341..22723231Ran-interacting Mob1 protein, expressed
LOC_Os04g38620Os.20447.1.S1_at11/114+22724123..22727814Nucleosome assembly protein containing protein, expressed
LOC_Os04g38630Os.6726.1.S1_x_at11/114+22728742..22732808Helicase conserved C-terminal domain containing protein, expressed
LOC_Os04g38630Os.6726.2.S1_at10/114+22728742..22732808Helicase conserved C-terminal domain containing protein, expressed
LOC_Os04g38640Os.17129.1.S1_at11/114+22735781..22741396Trypsin family protein, expressed
LOC_Os04g38650OsAffx.4016.1.S1_at11/114+22743108..22743726expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10386.1.S1_at--243--2511Chr04:22721460..22721575 (25 bp)
AACATTGTTCGACTTTACTTGGCCA
LOC_Os04g38610
Os.10386.1.S1_at--281--1951NONE
ACTGTTGATAAACCCCTTGAGTGAA
NONE
Os.10386.1.S1_at--594--631Chr04:22720739..22720763 (25 bp)
ATGCTTAGCAATGTCTGAGATCTTC
LOC_Os04g38610
Os.10386.1.S1_at--1129--6291Chr04:22720703..22720727 (25 bp)
GATGAACTTCAATGTCCATGACTGG
LOC_Os04g38610
Os.10386.1.S1_at--43--1191Chr04:22720632..22720656 (25 bp)
AGTACCACTACTGAGCATCGCATGA
LOC_Os04g38610
Os.10386.1.S1_at--574--531Chr04:22720616..22720640 (25 bp)
ATCGCATGAACTTTTCCTTGGTCTA
LOC_Os04g38610
Os.10386.1.S1_at--1050--10331Chr04:22720576..22720600 (25 bp)
TTTAGATCGGCAACATTCGTTTTGT
LOC_Os04g38610
Os.10386.1.S1_at--790--391Chr04:22720539..22720563 (25 bp)
ATCAGCAGACCCCTGTTGAACTTGA
LOC_Os04g38610
Os.10386.1.S1_at--476--9411Chr04:22720500..22720524 (25 bp)
TCAGGAATTTACTCATTTGGCCCAT
LOC_Os04g38610
Os.10386.1.S1_at--1117--4851Chr04:22720392..22720416 (25 bp)
GCTAGAGTTCTGGACTTCTTCATTT
LOC_Os04g38610
Os.10386.1.S1_at--751--3651Chr04:22720375..22720399 (25 bp)
CTTCATTTTTGAGTCCACAGGTTCG
LOC_Os04g38610
Target Sequence 
AACATTGTTCGACTTTACTTGGCCAATATACGCCTCAAGAATGCAGCTACTGATGTAGTTATTACTGCATATGAGCCACT
GTTGATAAACCCCTTGAGTGAAAGCNCCAGTGCANTTGCAGCCGGTCCAGCAGTACCAGCAGAACAAGCAGGATGCTTAG
CAATGTCTGAGATCTTCAAGCTCGCCGTGATGAACTTCAATGTCCATGACTGGAATCTTTTCAATGGCAGCAGTTGAAAC
AGGGTGGATAGTTTATCATAGTACCACTACTGAGCATCGCATGAACTTTTCCTTGGTCTAGTATCTGAACATTATTTTAG
ATCGGCAACATTCGTTTTGTTAATGTAGTGTCATCAGCAGACCCCTGTTGAACTTGAGTATCATGTTAGCTTCAGGAATT
TACTCATTTGGCCCATGATAGTTAATAGTAAGCACTAAATCAGTAANGAAGAATTATGTGTATCTATCAAGTTAGCTATG
AGTTCTGGACTTCTAGTTAGCTAGAGTTCTGGACTTCTTCATTTTTGAGTCCACAGGTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10386.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis