Browse Element(s) Details


Os.28203.1.S1_a_at

Description gb:AK071685.1
DB_XREF= gi:32981708
TID=Os.28203.1
CNT=115
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.28203 (NCBI UniGene Cluster)
UG_TITLE=Glyceralehyde-3-phosphate dehydrogenase subunit (GAPDH) mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023108H17, full insert sequence.
FL= gb:AK103932.1 gb:AK104690.1 gb:AK103922.1 gb:AK103994.1 gb:AK119522.1 gb:AK119220.1 gb:AK071685.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3860011/11Glyceraldehyde-3-phosphate dehydrogenase A, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38560Os.18265.1.S1_at11/114+22691327..22693357Pectinesterase family protein, expressed
LOC_Os04g38560OsAffx.23254.1.S1_x_at1/114+22691327..22693357Pectinesterase family protein, expressed
LOC_Os04g38560Os.54835.1.S1_s_at1/114+22691327..22693357Pectinesterase family protein, expressed
LOC_Os04g38570Os.48287.1.S1_at11/114+22695700..22702202multidrug resistance P-glycoprotein, putative, expressed
LOC_Os04g38580NANA4+22706530..22707312hypothetical protein
LOC_Os04g38590Os.55234.1.S1_s_at2/114+22710340..22710689hypothetical protein
LOC_Os04g38600Os.28203.1.S1_a_at11/114+22718006..22719956Glyceraldehyde-3-phosphate dehydrogenase A, chloroplast precursor, putative, expressed
LOC_Os04g38610Os.10386.1.S1_at10/114+22720341..22723231Ran-interacting Mob1 protein, expressed
LOC_Os04g38620Os.20447.1.S1_at11/114+22724123..22727814Nucleosome assembly protein containing protein, expressed
LOC_Os04g38630Os.6726.1.S1_x_at11/114+22728742..22732808Helicase conserved C-terminal domain containing protein, expressed
LOC_Os04g38630Os.6726.2.S1_at10/114+22728742..22732808Helicase conserved C-terminal domain containing protein, expressed
LOC_Os04g38640Os.17129.1.S1_at11/114+22735781..22741396Trypsin family protein, expressed
LOC_Os04g38650OsAffx.4016.1.S1_at11/114+22743108..22743726expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0006950biological_processresponse to stress
GO:0006979biological_processresponse to oxidative stress
GO:0009408biological_processresponse to heat
GO:0009416biological_processresponse to light stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0009570cellular_componentchloroplast stroma
GO:0004365molecular_functionglyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity
GO:0008886molecular_functionglyceraldehyde-3-phosphate dehydrogenase (NADP+) activity
GO:0008943molecular_functionglyceraldehyde-3-phosphate dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28203.1.S1_a_at--251--9431Chr04:22719461..22719485 (25 bp)
TCGTGTCCGTCGACTTCAGGTGCTC
LOC_Os04g38600
Os.28203.1.S1_a_at--900--5751Chr04:22719487..22719511 (25 bp)
GACGTGTCGTGCACCATCGACGCGT
LOC_Os04g38600
Os.28203.1.S1_a_at--857--511Chr04:22719502..22719526 (25 bp)
ATCGACGCGTCGCTCAGCATGGTCA
LOC_Os04g38600
Os.28203.1.S1_a_at--348--511Chr04:22719607..22719631 (25 bp)
ATCGTCGCCAACCAGTGGAAGTGAG
LOC_Os04g38600
Os.28203.1.S1_a_at--167--7391Chr04:22719627..22719651 (25 bp)
GTGAGAACGTAGAAGCTGCTGCTGC
LOC_Os04g38600
Os.28203.1.S1_a_at--1105--9571Chr04:22719705..22719729 (25 bp)
TCTTCCTCTCGATCCTTTGTAATGA
LOC_Os04g38600
Os.28203.1.S1_a_at--161--5211Chr04:22719730..22719754 (25 bp)
GAATTTCGAAGTTTCGAGCGCCCAA
LOC_Os04g38600
Os.28203.1.S1_a_at--209--10311Chr04:22719741..22719765 (25 bp)
TTTCGAGCGCCCAACACAGTTTCTT
LOC_Os04g38600
Os.28203.1.S1_a_at--701--9611Chr04:22719794..22719818 (25 bp)
TCATCTGACTTTTCACTGTCCGGCA
LOC_Os04g38600
Os.28203.1.S1_a_at--935--8391Chr04:22719810..22719834 (25 bp)
TGTCCGGCACGGATTATTATCGACT
LOC_Os04g38600
Os.28203.1.S1_a_at--1087--151Chr04:22719822..22719846 (25 bp)
ATTATTATCGACTTCCGGCAATTGG
LOC_Os04g38600
Target Sequence 
TCGTGTCCGTCGACTTCAGGTGCTCCGACGTGTCGTGCACCATCGACGCGTCGCTCAGCATGGTCATGGGCGACGACATG
GTGAAGGTCATCGCCTGGTACGACAACGAGTGGGGATACTCGCCAGAGGGTCGTCGACCTCGCCGACATCGTCGCCAACC
AGTGGAAGTGAGAACGTAGAAGCTGCTGCTGCTGCTGCCTTTGTAACTCCACCTCGCTCCAAAAATTTTCCCCAGACTTC
TTCCTTCTTCCTCTCGATCCTTTGTAATGAGAATTTCGAAGTTTCGAGCGCCCAACACAGTTTCTTGTTTCTTTCTTTGC
TTTTCTTCCCCACCTCATCTGACTTTTCACTGTCCGGCACGGATTATTATCGACTTCCGGCAATTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28203.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis