Browse Element(s) Details


Os.6726.1.S1_x_at

Description gb:AK105401.1
DB_XREF= gi:32990610
TID=Os.6726.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6726 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-123-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-C11, full insert sequence.
FL= gb:AK105401.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3863011/11Helicase conserved C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38580NANA4+22706530..22707312hypothetical protein
LOC_Os04g38590Os.55234.1.S1_s_at2/114+22710340..22710689hypothetical protein
LOC_Os04g38600Os.28203.1.S1_a_at11/114+22718006..22719956Glyceraldehyde-3-phosphate dehydrogenase A, chloroplast precursor, putative, expressed
LOC_Os04g38610Os.10386.1.S1_at10/114+22720341..22723231Ran-interacting Mob1 protein, expressed
LOC_Os04g38620Os.20447.1.S1_at11/114+22724123..22727814Nucleosome assembly protein containing protein, expressed
LOC_Os04g38630Os.6726.1.S1_x_at11/114+22728742..22732808Helicase conserved C-terminal domain containing protein, expressed
LOC_Os04g38630Os.6726.2.S1_at10/114+22728742..22732808Helicase conserved C-terminal domain containing protein, expressed
LOC_Os04g38640Os.17129.1.S1_at11/114+22735781..22741396Trypsin family protein, expressed
LOC_Os04g38650OsAffx.4016.1.S1_at11/114+22743108..22743726expressed protein
LOC_Os04g38660OsAffx.26378.1.S1_at11/114+22750781..22751900amino acid transporter family protein, putative
LOC_Os04g38670OsAffx.14192.1.S1_at11/114+22752744..22753223amino acid transporter family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0016070biological_processRNA metabolism
GO:0005739cellular_componentmitochondrion
GO:0004004molecular_functionATP-dependent RNA helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6726.1.S1_x_at--1144--7931Chr04:22729315..22729339 (25 bp)
GGATAGACCTAGTCAGGACCCTTCT
LOC_Os04g38630
Os.6726.1.S1_x_at--956--10551Chr04:22729294..22729318 (25 bp)
TTCTTCCTTGAACTTTGTGGCATGA
LOC_Os04g38630
Os.6726.1.S1_x_at--790--10471Chr04:22729268..22729292 (25 bp)
TTACTTGTGGCCTGGGTGATTAACC
LOC_Os04g38630
Os.6726.1.S1_x_at--704--6551Chr04:22729251..22729275 (25 bp)
GATTAACCCCGACTGATTGCTTCAT
LOC_Os04g38630
Os.6726.1.S1_x_at--301--9631Chr04:22729230..22729254 (25 bp)
TCATGAGATCGTGTGTAGCCAAGTC
LOC_Os04g38630
Os.6726.1.S1_x_at--1148--1691Chr04:22729214..22729238 (25 bp)
AGCCAAGTCGTTGCAGCCATTTCAA
LOC_Os04g38630
Os.6726.1.S1_x_at--345--8271Chr04:22729177..22729201 (25 bp)
GGCAGTTCATCTATCAGTTCTGGTG
LOC_Os04g38630
Os.6726.1.S1_x_at--1150--4851Chr04:22729073..22729097 (25 bp)
GCTAGTATGCTTTAGTGGCGCCACG
LOC_Os04g38630
Os.6726.1.S1_x_at--362--4551Chr04:22729056..22729080 (25 bp)
GCGCCACGGGATACTTTAACTTCAG
LOC_Os04g38630
Os.6726.1.S1_x_at--221--7691Chr04:22728894..22728918 (25 bp)
GGGTATTCACTTAGCCTTGGATGTA
LOC_Os04g38630
Os.6726.1.S1_x_at--35--1631Chr04:22728818..22728842 (25 bp)
AGCGGTATAACCTTCTGCAACGTTC
LOC_Os04g38630
Target Sequence 
GGATAGACCTAGTCAGGACCCTTCTTCCTTGAACTTTGTGGCATGAATTACTTGTGGCCTGGGTGATTAACCCCGACTGA
TTGCTTCATGAGATCGTGTGTAGCCAAGTCGTTGCAGCCATTTCAACCTCCCAGAACTGGCAGTTCATCTATCAGTTCTG
GTGTAGGATGGTTGGTTATGTTGGCTGAAGTTTGGAATTGATCTTATCCTCAAAATGACACTGAAGCCATCCAGAGGTGT
AAGCTAGTATGCTTTAGTGGCGCCACGGGATACTTTAACTTCAGTTTTGTAGATTATTTGCACGAGAAGGATATATCGAC
ATGAATTCATCAGAATTAAGTTATTAGTGTTTTCCTGATATGAACAAGGGAGTAAGGGACTGTGGTAATAAGTTAGCTGG
GGGATATACGGTTTTTTTATTGGGTATTCACTTAGCCTTGGATGTAAGGGACTAGAAAGTAAACTTGTTTTGTTTCAGTT
CTGTTTGAATCAATGGCAGCGGTATAACCTTCTGCAACGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6726.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis