Browse Element(s) Details


Os.20447.1.S1_at

Description gb:AK102874.1
DB_XREF= gi:32988083
TID=Os.20447.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.20447 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-156-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033112C19, full insert sequence.
FL= gb:AK102874.1 gb:AK109192.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3862011/11Nucleosome assembly protein containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38570Os.48287.1.S1_at11/114+22695700..22702202multidrug resistance P-glycoprotein, putative, expressed
LOC_Os04g38580NANA4+22706530..22707312hypothetical protein
LOC_Os04g38590Os.55234.1.S1_s_at2/114+22710340..22710689hypothetical protein
LOC_Os04g38600Os.28203.1.S1_a_at11/114+22718006..22719956Glyceraldehyde-3-phosphate dehydrogenase A, chloroplast precursor, putative, expressed
LOC_Os04g38610Os.10386.1.S1_at10/114+22720341..22723231Ran-interacting Mob1 protein, expressed
LOC_Os04g38620Os.20447.1.S1_at11/114+22724123..22727814Nucleosome assembly protein containing protein, expressed
LOC_Os04g38630Os.6726.1.S1_x_at11/114+22728742..22732808Helicase conserved C-terminal domain containing protein, expressed
LOC_Os04g38630Os.6726.2.S1_at10/114+22728742..22732808Helicase conserved C-terminal domain containing protein, expressed
LOC_Os04g38640Os.17129.1.S1_at11/114+22735781..22741396Trypsin family protein, expressed
LOC_Os04g38650OsAffx.4016.1.S1_at11/114+22743108..22743726expressed protein
LOC_Os04g38660OsAffx.26378.1.S1_at11/114+22750781..22751900amino acid transporter family protein, putative
LOC_Os04g38670OsAffx.14192.1.S1_at11/114+22752744..22753223amino acid transporter family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006334biological_processnucleosome assembly
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20447.1.S1_at--261--1291Chr04:22724874..22724898 (25 bp)
AGATCTGTGGCCTAATCCTTTGAAG
LOC_Os04g38620
Os.20447.1.S1_at--884--10031Chr04:22724732..22724756 (25 bp)
TAGAGCTACTGGATGACGATGACGA
LOC_Os04g38620
Os.20447.1.S1_at--251--5471Chr04:22724404..22724428 (25 bp)
GAACTGAGCTCTCTGTCATGTCAGA
LOC_Os04g38620
Os.20447.1.S1_at--800--7111Chr04:22724385..22724409 (25 bp)
GTCAGATTCTTTTGGCCTGGACAAC
LOC_Os04g38620
Os.20447.1.S1_at--138--8431Chr04:22724372..22724396 (25 bp)
GGCCTGGACAACTTATGTCTGCAGA
LOC_Os04g38620
Os.20447.1.S1_at--43--8271Chr04:22724323..22724347 (25 bp)
GGCTGAAACAGCAGGGCGTCCCCTT
LOC_Os04g38620
Os.20447.1.S1_at--538--3671Chr04:22724301..22724325 (25 bp)
CTTTTGCGGCGTTGTGGTGCTCGAC
LOC_Os04g38620
Os.20447.1.S1_at--956--7771Chr04:22724286..22724310 (25 bp)
GGTGCTCGACTTAGCTGGCAGTGTA
LOC_Os04g38620
Os.20447.1.S1_at--198--8271Chr04:22724270..22724294 (25 bp)
GGCAGTGTAGGGACTTGCTCCGAAA
LOC_Os04g38620
Os.20447.1.S1_at--37--6551Chr04:22724206..22724230 (25 bp)
GATTTTGTTGCATGCGCGATCGAAA
LOC_Os04g38620
Os.20447.1.S1_at--330--7431Chr04:22724162..22724186 (25 bp)
GTGTTATTTACCTTGCCGTTGGATT
LOC_Os04g38620
Target Sequence 
AGATCTGTGGCCTAATCCTTTGAAGTACTTCAACAATGAATTTGAAGAAGAATTAGAGCTACTGGATGACGATGACGAGG
TATCTGATGATGACGATGAGGAGGAGGATGATGAAGACCAAGGTGAAGGAGAGGAGGATGGAGAGGAGAACTGAGCTCTC
TGTCATGTCAGATTCTTTTGGCCTGGACAACTTATGTCTGCAGAAANNGGAGACCGGGCCTCCTGGAGGGCTGAAACAGC
AGGGCGTCCCCTTTTGCGGCGTTGTGGTGCTCGACTTAGCTGGCAGTGTAGGGACTTGCTCCGAAAAACTTTGTTCTATG
GAGAAATAACTCGAGTTCAATAGATGATTTTGTTGCATGCGCGATCGAAATGTTGCGTGTTGTTTGGAAGTGTTATTTAC
CTTGCCGTTGGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20447.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis