Browse Element(s) Details


Os.27741.1.S1_at

Description gb:CB622400
DB_XREF= gi:29617388
DB_XREF=OSIIEa09A18.r
CLONE=OSIIEa09A18
TID=Os.27741.1
CNT=11
FEA=EST
TIER=ConsEnd
STK=4
UG=Os.27741 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T46961 (A.thaliana) T46961 molybdenum cofactor biosynthesis protein cnx3 (validated) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3870011/11Molybdenum cofactor biosynthesis protein C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38640Os.17129.1.S1_at11/114+22735781..22741396Trypsin family protein, expressed
LOC_Os04g38650OsAffx.4016.1.S1_at11/114+22743108..22743726expressed protein
LOC_Os04g38660OsAffx.26378.1.S1_at11/114+22750781..22751900amino acid transporter family protein, putative
LOC_Os04g38670OsAffx.14192.1.S1_at11/114+22752744..22753223amino acid transporter family protein, putative
LOC_Os04g38680Os.15621.1.S1_at11/114+22758757..22761274Transmembrane amino acid transporter protein, expressed
LOC_Os04g38690OsAffx.14193.1.S1_s_at11/114+22763316..22764500plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os04g38700Os.27741.1.S1_at11/114+22764690..22769235Molybdenum cofactor biosynthesis protein C, putative, expressed
LOC_Os04g38710OsAffx.4017.1.S1_at10/114+22772385..22774486hypothetical protein
LOC_Os04g38720Os.15708.1.S1_a_at11/114+22775498..22777550No apical meristem protein, expressed
LOC_Os04g38720Os.51926.1.S1_x_at1/114+22775498..22777550No apical meristem protein, expressed
LOC_Os04g38730OsAffx.14194.1.S1_at10/114+22782431..22784478hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006777biological_processMo-molybdopterin cofactor biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27741.1.S1_at--1030--2091Chr04:22768638..22768662 (25 bp)
ACATGCAGGGTCTTGCTAGGCCAGG
LOC_Os04g38700
Os.27741.1.S1_at--692--2911Chr04:22768699..22768723 (25 bp)
AAGGAGATGTTCTAACTGTTGCAAA
LOC_Os04g38700
Os.27741.1.S1_at--331--1751Chr04:22768780..22768804 (25 bp)
ACCTTAATCTATCCCATGTTCGTGT
LOC_Os04g38700
Os.27741.1.S1_at--969--6711Chr04:22768797..22768821 (25 bp)
GTTCGTGTTGATCTTACTCTTAACG
LOC_Os04g38700
Os.27741.1.S1_at--194--8071Chr04:22768848..22768872 (25 bp)
GGAGAAGCTTCAACCAGTGGCAAGA
LOC_Os04g38700
Os.27741.1.S1_at--555--2151Chr04:22768896..22768920 (25 bp)
ACAGCAGTTGCCATTGCTGGTCTCA
LOC_Os04g38700
Os.27741.1.S1_at--752--71Chr04:22768908..22768932 (25 bp)
ATTGCTGGTCTCACAGTCTATGACA
LOC_Os04g38700
Os.27741.1.S1_at--242--7151Chr04:22768923..22768947 (25 bp)
GTCTATGACATGTGCAAAGCTGCTT
LOC_Os04g38700
Os.27741.1.S1_at--290--311Chr04:22769076..22769100 (25 bp)
ATACCAATAGGTTCTGAGGCTTCAA
LOC_Os04g38700
Os.27741.1.S1_at--69--10351Chr04:22769145..22769169 (25 bp)
TTTACTCTCTAATATCGCACAATGC
LOC_Os04g38700
Os.27741.1.S1_at--504--9351Chr04:22769159..22769183 (25 bp)
TCGCACAATGCACTGTTCAATTATT
LOC_Os04g38700
Target Sequence 
ACATGCAGGGTCTTGCTAGGCCAGGAGGCATTTGATTTGGTAGCATCAAACAAGATTGCCAAAGGAGATGTTCTAACTGT
TGCAAAGATTGCTGGAATAACTGGTGCAAAGCAAACCAGCAACCTCATACCGCTGTGCCACAACCTTAATCTATCCCATG
TTCGTGTTGATCTTACTCTTAACGAAGAAGATTCTAGTGTTATGATAGAAGGAGAAGCTTCAACCAGTGGCAAGACAGGG
GTTGAGATGGAAGCAATGACAGCAGTTGCCATTGCTGGTCTCACAGTCTATGACATGTGCAAAGCTGCTTCAAAGAACAT
ATGCATAACAGATATCTGTCTCCAGCACAAATCTGGTGGAAAGAGTGGAAGCTGGTCCAGAAGTTAGACATTTATGTGAA
TCACAAGAATGAATTGGGTACCAAATTTCATAACCACCATACCAATAGGTTCTGAGGCTTCAATAAATGTTTGTTGGAAT
ATTTTTACTTCTAGTAATCGGATTAATTTTACTCTCTAATATCGCACAATGCACTGTTCAATTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27741.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis