Browse Element(s) Details


OsAffx.14193.1.S1_s_at

Description tigr:9632.m03653
TID=OsAffx.14193.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=plant integral membrane protein TIGR01569, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3869011/11plant integral membrane protein TIGR01569 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38640Os.17129.1.S1_at11/114+22735781..22741396Trypsin family protein, expressed
LOC_Os04g38650OsAffx.4016.1.S1_at11/114+22743108..22743726expressed protein
LOC_Os04g38660OsAffx.26378.1.S1_at11/114+22750781..22751900amino acid transporter family protein, putative
LOC_Os04g38670OsAffx.14192.1.S1_at11/114+22752744..22753223amino acid transporter family protein, putative
LOC_Os04g38680Os.15621.1.S1_at11/114+22758757..22761274Transmembrane amino acid transporter protein, expressed
LOC_Os04g38690OsAffx.14193.1.S1_s_at11/114+22763316..22764500plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os04g38700Os.27741.1.S1_at11/114+22764690..22769235Molybdenum cofactor biosynthesis protein C, putative, expressed
LOC_Os04g38710OsAffx.4017.1.S1_at10/114+22772385..22774486hypothetical protein
LOC_Os04g38720Os.15708.1.S1_a_at11/114+22775498..22777550No apical meristem protein, expressed
LOC_Os04g38720Os.51926.1.S1_x_at1/114+22775498..22777550No apical meristem protein, expressed
LOC_Os04g38730OsAffx.14194.1.S1_at10/114+22782431..22784478hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14193.1.S1_s_at--1080--6691Chr04:22763661..22763685 (25 bp)
GTTCGAGGCCAAGTACAGCGACCTC
LOC_Os04g38690
OsAffx.14193.1.S1_s_at--1161--4091Chr04:22763842..22763866 (25 bp)
CGAACGCGGTGGTGTGCACGTACCT
LOC_Os04g38690
OsAffx.14193.1.S1_s_at--166--511Chr04:22763889..22763913 (25 bp)
ATCGTGCACATCCTCAGGCCCAGGG
LOC_Os04g38690
OsAffx.14193.1.S1_s_at--679--2171Chr04:22764059..22764079 (21 bp)
ACACGGCGATGCTGGCTCTGCTGAC
LOC_Os04g38690
OsAffx.14193.1.S1_s_at--157--2591Chr04:22764129..22764153 (25 bp)
AACGTGCGGGCAAACTGGTTCTCCA
LOC_Os04g38690
OsAffx.14193.1.S1_s_at--55--8411Chr04:22764268..22764292 (25 bp)
GGCGCCACTGATCATAGACGTACGT
LOC_Os04g38690
OsAffx.14193.1.S1_s_at--986--3951Chr04:22764290..22764314 (25 bp)
CGTACGTACGATACGACGACCACCA
LOC_Os04g38690
OsAffx.14193.1.S1_s_at--403--6371Chr04:22764350..22764374 (25 bp)
GATCCATCGTGCGTGCACCAATATT
LOC_Os04g38690
OsAffx.14193.1.S1_s_at--442--3011Chr04:22764375..22764399 (25 bp)
AATGCACGTCTTTTTTGTTCCTTTG
LOC_Os04g38690
OsAffx.14193.1.S1_s_at--155--8811Chr04:22764390..22764414 (25 bp)
TGTTCCTTTGCTTCCCTAATTTAAT
LOC_Os04g38690
OsAffx.14193.1.S1_s_at--737--7471Chr04:22764424..22764448 (25 bp)
GTGTGTTTCCTTTCATAAATGTATA
LOC_Os04g38690
Target Sequence 
GTTCGAGGCCAAGTACAGCGACCTCCCGTCCTTCACGTTCTTCGTGGCGGCGAACGCGGTGGTGTGCACGTACCTGGTGC
TGTCCATCCCGCTGTCCATCGTGCACATCCTCAGGCCCAGGGCGCGGTACAGCCGGCTGTTCCTCGTCTTCTTCGACACG
GCGATGCTGGCTCTGCTGACGGCGGGCGCGTCGGCGGCGGCGGCGATCGTGTACCTGGCGCACAAGGGCAACGTGCGGGC
AAACTGGTTCTCCATCTGCCAGCAGTTCGACTCCTTCTGCGAGCGCATCTCCGGCTCGCTCATCGGCTCCTTCGCCGCCA
TGGTCCTGCTCGTCGTCCTCATCACCCTCTCCGCGTTCGCGCTCGCAAGGCGCCACTGATCATAGACGTACGTACGTACG
ATACGACGACCACCATCCTGCAGCCAGCAGCCCGGCCGATCGACCAGCGCGATCCATCGTGCGTGCACCAATATTAATGC
ACGTCTTTTTTGTTCCTTTGCTTCCCTAATTTAATTAGCTCTGTGTGTGTTTCCTTTCATAAATGTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14193.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis