Browse Element(s) Details


OsAffx.29907.2.S1_at

Description tigr:9637.m01547
TID=OsAffx.29907.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to OsD305
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1803011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g18010OsAffx.29906.1.S1_at11/119+11021045..11027729Protein kinase domain containing protein
LOC_Os09g18010Os.23623.1.A1_at2/119+11021045..11027729Protein kinase domain containing protein
LOC_Os09g18020OsAffx.29907.1.S1_at11/119+11029070..11038913Protein kinase domain containing protein, expressed
LOC_Os09g18030OsAffx.29907.2.S1_at11/119+11048168..11055785Protein kinase domain containing protein
LOC_Os09g18040OsAffx.29907.3.S1_at11/119+11058196..11059806Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g18050NANA9+11067446..11067781hypothetical protein
LOC_Os09g18060NANA9+11070161..11070490hypothetical protein
LOC_Os09g18070OsAffx.29909.1.S1_at11/119+11074866..11076417hypothetical protein
LOC_Os09g18080OsAffx.7455.1.S1_at1/119+11077035..11084278retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g18080Os.54787.1.S1_at1/119+11077035..11084278retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g18080Os.48426.1.A1_at1/119+11077035..11084278retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g18080OsAffx.17770.1.S1_x_at1/119+11077035..11084278retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29907.2.S1_at--168--4511Chr09:11049788..11049812 (25 bp)
GCCGATGAACGTCTAGGAGGTTCCT
LOC_Os09g18030
OsAffx.29907.2.S1_at--799--6151Chr09:11049772..11049796 (25 bp)
GAGGTTCCTATATTTTCAACTCCAT
LOC_Os09g18030
OsAffx.29907.2.S1_at--170--1551Chr09:11048605..11048629 (25 bp)
AGCTTCCTTTGTACGTCAACACTAG
LOC_Os09g18030
OsAffx.29907.2.S1_at--624--2471Chr09:11048588..11048612 (25 bp)
AACACTAGGGTTCCATTGCTCCCAT
LOC_Os09g18030
OsAffx.29907.2.S1_at--872--7191Chr09:11048526..11048550 (25 bp)
GTCGTCGGTGGCTCTACTTTGTTGC
LOC_Os09g18030
OsAffx.29907.2.S1_at--598--9871Chr09:11048512..11048536 (25 bp)
TACTTTGTTGCCTGCGTCGAAGACT
LOC_Os09g18030
OsAffx.29907.2.S1_at--534--7191Chr09:11048497..11048521 (25 bp)
GTCGAAGACTTAGCTGTTCCCGGAG
LOC_Os09g18030
OsAffx.29907.2.S1_at--799--9991Chr09:11048487..11048511 (25 bp)
TAGCTGTTCCCGGAGTCAGCGTCAA
LOC_Os09g18030
OsAffx.29907.2.S1_at--1146--8451Chr09:11048441..11048465 (25 bp)
TGGCTCGGACTCTCTAGGCGGCGAC
LOC_Os09g18030
OsAffx.29907.2.S1_at--640--10591Chr09:11048414..11048438 (25 bp)
TTCTCCTGCTGGTGGCTATGGCTCA
LOC_Os09g18030
OsAffx.29907.2.S1_at--362--8091Chr09:11048380..11048404 (25 bp)
GGACCCAGCGACTCGATGTCGGGTT
LOC_Os09g18030
Target Sequence 
GCCGATGAACGTCTAGGAGGTTCCTATATTTTCAACTCCATGTGGAAGGTTCTAGATGCCATGATGATGTGCATAACAGA
TATTGCTTCTCAAAGGCTAATGATGTCCGCCGTGGTCTTGCAATTGAAGGAAAACCATGAATTGGAGGAAGCTCATGGGG
ATGGGTTACTTGGAAAATGTATACTGATTATGGTAATTAATGCTGATTACGGGGGTGGGGATTGCGCAGCGCGAGTTGAG
CAGCTGGCGCTTGCGCGCCCACTAGGAAGCCCCAGCTTCCTTTGTACGTCAACACTAGGGTTCCATTGCTCCCATGTCCG
CCTAACCGTGTCGTCCAAAACCCTTCAACGCCGTCGTCGGTGGCTCTACTTTGTTGCCTGCGTCGAAGACTTAGCTGTTC
CCGGAGTCAGCGTCAACGGCGCCACCAACCTTCGCGGTGGCTCGGACTCTCTAGGCGGCGACGCTTCTCCTGCTGGTGGC
TATGGCTCAGCTGCTCCCGGACCCAGCGACTCGATGTCGGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29907.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis