Browse Element(s) Details


OsAffx.6320.1.S1_at

Description tigr:9637.m01543
TID=OsAffx.6320.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1800011/11Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17970OsAffx.6319.1.S1_at11/119+10991178..10997260Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g17980OsAffx.29904.1.S1_at11/119+10999929..11000465hypothetical protein
LOC_Os09g17990OsAffx.29905.1.S1_at11/119+11000738..11003821Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g17990Os.51943.1.S1_at1/119+11000738..11003821Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g18000OsAffx.6320.1.S1_at11/119+11019019..11020337Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g18010OsAffx.29906.1.S1_at11/119+11021045..11027729Protein kinase domain containing protein
LOC_Os09g18010Os.23623.1.A1_at2/119+11021045..11027729Protein kinase domain containing protein
LOC_Os09g18020OsAffx.29907.1.S1_at11/119+11029070..11038913Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6320.1.S1_at--305--1451Chr09:11019375..11019399 (25 bp)
AGAACCACAGGATTGCCGCCGACCA
LOC_Os09g18000
OsAffx.6320.1.S1_at--311--1011Chr09:11019383..11019407 (25 bp)
AGGATTGCCGCCGACCAGGAGAGCA
LOC_Os09g18000
OsAffx.6320.1.S1_at--296--8691Chr09:11019510..11019534 (25 bp)
TGTCCTTCGTCCACGGCAACTACGA
LOC_Os09g18000
OsAffx.6320.1.S1_at--290--5771Chr09:11019562..11019586 (25 bp)
GACGTTGAGCTTCGACCTGTACCTC
LOC_Os09g18000
OsAffx.6320.1.S1_at--813--8731Chr09:11019579..11019603 (25 bp)
TGTACCTCGGCGTAGACCGCTGGGC
LOC_Os09g18000
OsAffx.6320.1.S1_at--214--8651Chr09:11019599..11019623 (25 bp)
TGGGCCACCGTGGACAAAGACTACG
LOC_Os09g18000
OsAffx.6320.1.S1_at--996--2331Chr09:11019614..11019638 (25 bp)
AAAGACTACGCCCACGAGGCGGTGT
LOC_Os09g18000
OsAffx.6320.1.S1_at--827--7451Chr09:11019665..11019689 (25 bp)
GTGTGCCTGATAAACACCGGCAGCG
LOC_Os09g18000
OsAffx.6320.1.S1_at--267--1931Chr09:11019729..11019753 (25 bp)
ACGGTGCGCTCTACCCGTCGGTGAT
LOC_Os09g18000
OsAffx.6320.1.S1_at--338--3251Chr09:11019757..11019781 (25 bp)
CAACCAGTCCATGGCGAGGTATGTA
LOC_Os09g18000
OsAffx.6320.1.S1_at--215--3231Chr09:11019805..11020244 (25 bp)
CAAGTTTATCACAAGATTCTCAGAA
LOC_Os09g18000
Target Sequence 
AGAACCACAGGATTGCCGCCGACCAGGAGAGCAGGTGGGGCGACACCAACCTCCGGACGCTCCGGAGCTTCCCCTCCGGC
GTGCGCAACTGCTACACGCTCCCCACCCGCGCCGGCACCAGGTACCTGGTCCGCCTGTCCTTCGTCCACGGCAACTACGA
CGGCGGCGGCGGCGGCGGCGGCTGGTCGACGTTGAGCTTCGACCTGTACCTCGGCGTAGACCGCTGGGCCACCGTGGACA
AAGACTACGCCCACGAGGCGGTGTTCGTGGCGTGGGCGAGCTGGGCGCCGGTGTGCCTGATAAACACCGGCAGCGGCACG
CCGTTCGTGTCGGTGGTGGAGCTGAGGCCGCTCGACGGTGCGCTCTACCCGTCGGTGATGGCCAACCAGTCCATGGCGAG
GTATGTACGCTGCAGCATCGGGGACAATAACAAGTTTATCACAAGATTCTCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6320.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis