Browse Element(s) Details


OsAffx.6319.1.S1_at

Description tigr:9637.m01540
TID=OsAffx.6319.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to OsD305
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1797011/11Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17920OsAffx.92.1.S1_at2/119+10969671..10973912transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os09g17930Os.7775.1.S1_at11/119+10976574..10980275transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os09g17940OsAffx.6318.1.S1_at11/119+10982365..10982730hypothetical protein
LOC_Os09g17950NANA9+10985206..10985586retrotransposon protein, putative, unclassified
LOC_Os09g17960NANA9+10986601..10988460retrotransposon protein, putative, unclassified
LOC_Os09g17970OsAffx.6319.1.S1_at11/119+10991178..10997260Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g17980OsAffx.29904.1.S1_at11/119+10999929..11000465hypothetical protein
LOC_Os09g17990OsAffx.29905.1.S1_at11/119+11000738..11003821Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g17990Os.51943.1.S1_at1/119+11000738..11003821Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g18000OsAffx.6320.1.S1_at11/119+11019019..11020337Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g18010OsAffx.29906.1.S1_at11/119+11021045..11027729Protein kinase domain containing protein
LOC_Os09g18010Os.23623.1.A1_at2/119+11021045..11027729Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6319.1.S1_at--170--2231Chr09:10992262..10992283 (22 bp)
ACAAGGCTTGGATTATCTGCACAAA
LOC_Os09g17970
OsAffx.6319.1.S1_at--273--4411Chr09:10991480..10991504 (25 bp)
GCCACAGGTGAATCTCCAATACTAC
LOC_Os09g17970
OsAffx.6319.1.S1_at--1147--10091Chr09:10991449..10991473 (25 bp)
TAGGCCACATCGTTCAGCGCGTGAA
LOC_Os09g17970
OsAffx.6319.1.S1_at--386--2911Chr09:10991420..10991444 (25 bp)
AAGGTTGCTTCTGGTAACATCAGCT
LOC_Os09g17970
OsAffx.6319.1.S1_at--398--9651Chr09:10991401..10991425 (25 bp)
TCAGCTTAGTTGTGGATGCACGGCT
LOC_Os09g17970
OsAffx.6319.1.S1_at--958--6351Chr09:10991372..10991396 (25 bp)
GATGCCTATGATGTCAGCTCAATGT
LOC_Os09g17970
OsAffx.6319.1.S1_at--906--7331Chr09:10991322..10991346 (25 bp)
GTGCACCACTGATATTGGCGCTCAA
LOC_Os09g17970
OsAffx.6319.1.S1_at--724--4831Chr09:10991303..10991327 (25 bp)
GCTCAACGTCCAACAATGGCTGCTG
LOC_Os09g17970
OsAffx.6319.1.S1_at--278--1491Chr09:10991245..10991269 (25 bp)
AGCAAACTTGTGAGTATAGTGCCCT
LOC_Os09g17970
OsAffx.6319.1.S1_at--67--10191Chr09:10991231..10991255 (25 bp)
TATAGTGCCCTCAGTGGAACCACGG
LOC_Os09g17970
OsAffx.6319.1.S1_at--1059--7591Chr09:10991208..10991232 (25 bp)
GGGCACGAGTGATACCACGGTTTCA
LOC_Os09g17970
Target Sequence 
ACAAGGCTTGGATTATCTGCACAAAGGTTGTAGTCTACCAATAATTCATGGGGATGTGAAGACCAGTAACATTTTGTTAA
GTCAAAATTTGCAAGCCAAAATAGCAGATTTTGGACTTTCTAAATCTTATGTTAGTGAGACACAAACTCACATATCAGTC
ACTCCAGCTGGGTCAGCAGGTTACATGGACCCTGAGTACTTTCACACTGGCAGGCTCACCGAGAGCAGTGACGTTTATAG
CTTCGGCATTGTTCTACTAGAGATAGCCACAGGTGAATCTCCAATACTACCGGGGCTAGGCCACATCGTTCAGCGCGTGA
AAAATAAGGTTGCTTCTGGTAACATCAGCTTAGTTGTGGATGCACGGCTTGGAGATGCCTATGATGTCAGCTCAATGTGG
AAGGTGGTAGACACTGCATTGTTGTGCACCACTGATATTGGCGCTCAACGTCCAACAATGGCTGCTGTGGTTGCACAGCT
AAAGGAGAGTCTGGCATTGGAGCAAACTTGTGAGTATAGTGCCCTCAGTGGAACCACGGGCACGAGTGATACCACGGTTT
CA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6319.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis