Browse Element(s) Details


Os.7839.1.S1_at

Description gb:CA764242
DB_XREF= gi:27545903
DB_XREF=AF53-Rpf_02_M07_T7_024.ab1
CLONE=C0000679
TID=Os.7839.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.7839 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein pir:T06704 (A.thaliana) T06704 hypothetical protein T29H11.100 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1876011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g18729Os.22682.1.S1_a_at11/1112+10819906..10831099expressed protein
LOC_Os12g18729Os.53843.1.S1_at11/1112+10819906..10831099expressed protein
LOC_Os12g18750OsAffx.2602.1.S1_at11/1112+10838903..10840765hypothetical protein
LOC_Os12g18750Os.5300.1.S1_at1/1112+10838903..10840765hypothetical protein
LOC_Os12g18760Os.7839.1.S1_at11/1112+10845644..10853690expressed protein
LOC_Os12g18770Os.35068.1.S1_at11/1112+10859656..10869587Oxysterol-binding protein, expressed
LOC_Os12g18770Os.7268.1.S1_at1/1112+10859656..10869587Oxysterol-binding protein, expressed
LOC_Os12g18780OsAffx.2602.1.S1_at8/1112+10871779..10874766hypothetical protein
LOC_Os12g18780OsAffx.24341.1.S1_at7/1112+10871779..10874766hypothetical protein
LOC_Os12g18780Os.5300.1.S1_at1/1112+10871779..10874766hypothetical protein
LOC_Os12g18790OsAffx.19735.1.S1_at11/1112+10875919..10876454hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7839.1.S1_at--733--10811Chr12:10851384..10851408 (25 bp)
TTGTCCTTGACAAACTGCTTGGAGT
LOC_Os12g18760
Os.7839.1.S1_at--464--6411Chr12:10851993..10852017 (25 bp)
GATCTGGTGATGAACTTCCTGAGAA
LOC_Os12g18760
Os.7839.1.S1_at--899--10731Chr12:10852029..10852053 (25 bp)
TTGCAATCCATTTTGAAACCCAGGG
LOC_Os12g18760
Os.7839.1.S1_at--747--9551Chr12:10853246..10853270 (25 bp)
TCTTGGCTTACACCCTTTTAGGAGT
LOC_Os12g18760
Os.7839.1.S1_at--203--1111Chr12:10853287..10853311 (25 bp)
AGTGGTGATTGTGCTTTTCTCATCC
LOC_Os12g18760
Os.7839.1.S1_at--1153--10771Chr12:10853312..10853336 (25 bp)
TTGATCCACACTATACTGGTGCTGA
LOC_Os12g18760
Os.7839.1.S1_at--9--3031Chr12:10853381..10853405 (25 bp)
AATCCATCGACAGCAAAGGCCGTAG
LOC_Os12g18760
Os.7839.1.S1_at--548--5611Chr12:10853419..10853443 (25 bp)
GACAAGTTCTACAACCTTCTGCTAC
LOC_Os12g18760
Os.7839.1.S1_at--1006--10591Chr12:10853435..10853459 (25 bp)
TTCTGCTACCCCAAAGGCCTAATAT
LOC_Os12g18760
Os.7839.1.S1_at--835--4971Chr12:10853472..10853496 (25 bp)
GCATCGCTATGACACCTCTATGGAT
LOC_Os12g18760
Os.7839.1.S1_at--121--6031Chr12:10853501..10853525 (25 bp)
GAGAGTGGTTTGTACATCGCTATGA
LOC_Os12g18760
Target Sequence 
TTGTCCTTGACAAACTGCTTGGAGTTAGTTGCAAGGTTATTAATGTGAGATCTGGTGATGAACTTCCTGAGAAATGCAGA
GAACTTGCAATCCATTTTGAAACCCAGGGAACTCCTGTGATGATTGGTGGTGGAGTCTTGGCTTACACCCTTTTAGGAGT
TGACTACAACGAATCCAGTGGTGATTGTGCTTTTCTCATCCTTGATCCACACTATACTGGTGCTGATGATCTCAAGAAGA
TCGTGAATGGTGGATGGTGTGGGTGGAAGAAATCCATCGACAGCAAAGGCCGTAGCTTCTTCCNGAAAGACAAGTTCTAC
AACCTTCTGCTACCCCAAAGGCCTAATATGGTGTAAAAACTGCATCGCTATGACACCTCTATGGATCAAAGAGAGTGGTT
TGTACATCGCTATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7839.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis