Browse Element(s) Details


OsAffx.19735.1.S1_at

Description tigr:9640.m01854
TID=OsAffx.19735.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1879011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g18760Os.7839.1.S1_at11/1112+10845644..10853690expressed protein
LOC_Os12g18770Os.35068.1.S1_at11/1112+10859656..10869587Oxysterol-binding protein, expressed
LOC_Os12g18770Os.7268.1.S1_at1/1112+10859656..10869587Oxysterol-binding protein, expressed
LOC_Os12g18780OsAffx.2602.1.S1_at8/1112+10871779..10874766hypothetical protein
LOC_Os12g18780OsAffx.24341.1.S1_at7/1112+10871779..10874766hypothetical protein
LOC_Os12g18780Os.5300.1.S1_at1/1112+10871779..10874766hypothetical protein
LOC_Os12g18790OsAffx.19735.1.S1_at11/1112+10875919..10876454hypothetical protein
LOC_Os12g18800OsAffx.22702.1.S1_at1/1112+10882850..10885901transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g18800OsAffx.10473.1.S1_at1/1112+10882850..10885901transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g18810Os.52950.1.S1_at11/1112+10890652..10891472expressed protein
LOC_Os12g18820OsAffx.7636.1.S1_at11/1112+10898216..10904229Cytochrome P450 family protein
LOC_Os12g18820OsAffx.18297.1.S1_at1/1112+10898216..10904229Cytochrome P450 family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19735.1.S1_at--219--551Chr12:10875972..10875996 (25 bp)
ATCCCAGCATCGCTCTGCCGGAAAG
LOC_Os12g18790
OsAffx.19735.1.S1_at--902--4171Chr12:10875974..10875998 (25 bp)
CCCAGCATCGCTCTGCCGGAAAGGG
LOC_Os12g18790
OsAffx.19735.1.S1_at--377--7511Chr12:10876020..10876044 (25 bp)
GTGGAGGAAGCATAGCGACGCCGGT
LOC_Os12g18790
OsAffx.19735.1.S1_at--303--951Chr12:10876024..10876048 (25 bp)
AGGAAGCATAGCGACGCCGGTGGTG
LOC_Os12g18790
OsAffx.19735.1.S1_at--614--3251Chr12:10876256..10876280 (25 bp)
CAACGCGTGGCTCCAACAGGCAGCA
LOC_Os12g18790
OsAffx.19735.1.S1_at--136--2611Chr12:10876257..10876281 (25 bp)
AACGCGTGGCTCCAACAGGCAGCAC
LOC_Os12g18790
OsAffx.19735.1.S1_at--16--1891Chr12:10876315..10876339 (25 bp)
ACGATGACAACAACGCGGATGATGC
LOC_Os12g18790
OsAffx.19735.1.S1_at--66--5631Chr12:10876320..10876344 (25 bp)
GACAACAACGCGGATGATGCTAAGT
LOC_Os12g18790
OsAffx.19735.1.S1_at--773--3271Chr12:10876322..10876346 (25 bp)
CAACAACGCGGATGATGCTAAGTCG
LOC_Os12g18790
OsAffx.19735.1.S1_at--77--2211Chr12:10876324..10876348 (25 bp)
ACAACGCGGATGATGCTAAGTCGGG
LOC_Os12g18790
OsAffx.19735.1.S1_at--812--7891Chr12:10876348..10876372 (25 bp)
GGTTCGTCGACCCACGTGCCAGCCT
LOC_Os12g18790
Target Sequence 
ATCCCAGCATCGCTCTGCCGGAAAGGGGGGGGGGCTCATTGGGCTAGGGTGGAGGAAGCATAGCGACGCCGGTGGTGATG
GCGCGCTCAACGCGTGGCTCCAACAGGCAGCACCCGCGACACAGGCGAGGGGCGAGGAGGTGGAGGACGATGACAACAAC
GCGGATGATGCTAAGTCGGGGTTCGTCGACCCACGTGCCAGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19735.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis