Browse Element(s) Details


OsAffx.7636.1.S1_at

Description tigr:9640.m01857
TID=OsAffx.7636.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1882011/11Cytochrome P450 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g18780OsAffx.2602.1.S1_at8/1112+10871779..10874766hypothetical protein
LOC_Os12g18780OsAffx.24341.1.S1_at7/1112+10871779..10874766hypothetical protein
LOC_Os12g18780Os.5300.1.S1_at1/1112+10871779..10874766hypothetical protein
LOC_Os12g18790OsAffx.19735.1.S1_at11/1112+10875919..10876454hypothetical protein
LOC_Os12g18800OsAffx.22702.1.S1_at1/1112+10882850..10885901transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g18800OsAffx.10473.1.S1_at1/1112+10882850..10885901transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g18810Os.52950.1.S1_at11/1112+10890652..10891472expressed protein
LOC_Os12g18820OsAffx.7636.1.S1_at11/1112+10898216..10904229Cytochrome P450 family protein
LOC_Os12g18820OsAffx.18297.1.S1_at1/1112+10898216..10904229Cytochrome P450 family protein
LOC_Os12g18830NANA12+10907479..10910121retrotransposon protein, putative, unclassified
LOC_Os12g18840NANA12+10913871..10918073retrotransposon protein, putative, unclassified
LOC_Os12g18850OsAffx.31801.5.S1_at9/1112+10926473..10929185hypothetical protein
LOC_Os12g18850OsAffx.30013.1.S1_x_at1/1112+10926473..10929185hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7636.1.S1_at--277--2711Chr12:10901736..10901760 (25 bp)
AAGCATTGACTTCTTCGATGTTCTA
LOC_Os12g18820
OsAffx.7636.1.S1_at--948--4051Chr12:10901721..10901745 (25 bp)
CGATGTTCTACTCGAGGAGCTCAAG
LOC_Os12g18820
OsAffx.7636.1.S1_at--311--2291Chr12:10901673..10901697 (25 bp)
AAATGTCGCCTTGGACTTGATTTTC
LOC_Os12g18820
OsAffx.7636.1.S1_at--723--4711Chr12:10901643..10901667 (25 bp)
GCTGTTTGTTAGCTTCGAGACCACG
LOC_Os12g18820
OsAffx.7636.1.S1_at--608--7951Chr12:10901583..10901607 (25 bp)
GGATAATCCCAAGGCCCTGCAAGAA
LOC_Os12g18820
OsAffx.7636.1.S1_at--433--5511Chr12:10900005..10900029 (25 bp)
GAAAAGGCCCGATCTTAACTCTGAA
LOC_Os12g18820
OsAffx.7636.1.S1_at--853--4891Chr12:10899799..10899823 (25 bp)
GCTTACTAACATTGCGCCGGTGATG
LOC_Os12g18820
OsAffx.7636.1.S1_at--337--7351Chr12:10898725..10898749 (25 bp)
GTGCACAACTGTCCAGGATACTGCT
LOC_Os12g18820
OsAffx.7636.1.S1_at--235--8631Chr12:10898692..10898716 (25 bp)
TGGTGGCGCCTCCAAGGATTTTATG
LOC_Os12g18820
OsAffx.7636.1.S1_at--975--2431Chr12:10898260..10898284 (25 bp)
AAAATGGTGCTTTGTCCTGGACTAC
LOC_Os12g18820
OsAffx.7636.1.S1_at--601--8711Chr12:10898248..10898272 (25 bp)
TGTCCTGGACTACAATGCCCTGAAG
LOC_Os12g18820
Target Sequence 
AAGCATTGACTTCTTCGATGTTCTACTCGAGGAGCTCAAGGAGGAGAAGCATGCAATGAGCGAAAATGTCGCCTTGGACT
TGATTTTCTTGCTGCTGTTTGTTAGCTTCGAGACCACGGCATCCGGAATAACTGCAATATTGTGTTTTCTATCGGATAAT
CCCAAGGCCCTGCAAGAACTAACAGAGGAGCACGATTACATCCAAAAGAAAAGGCCCGATCTTAACTCTGAAATCACATG
GGAGGAATACAAATCTATGAAATTTACATCTCATGTTATACATGAAGCCTTAAGGCTTACTAACATTGCGCCGGTGATGT
TCAGAAAAGCCACAGAGGATGTTCATATAAAAGTTGAAGTGTGCACAACTGTCCAGGATACTGCTGAACCAGCTGGTGGC
GCCTCCAAGGATTTTATGGCCTTTGGAGGGGGACGGCGCTTGTGTGTTGGTGCCGATTTCGCCAAGCTGCAGATGGCGAT
CTTCCTCCATTGCTTAGTCACCAAGTATAGATGGAAAGTGATCAAGGGAGGGAAAATGGTGCTTTGTCCTGGACTACAAT
GCCCTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7636.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis