Browse Element(s) Details


OsAffx.31801.5.S1_at

Description tigr:9640.m01860
TID=OsAffx.31801.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g188509/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g18820OsAffx.7636.1.S1_at11/1112+10898216..10904229Cytochrome P450 family protein
LOC_Os12g18820OsAffx.18297.1.S1_at1/1112+10898216..10904229Cytochrome P450 family protein
LOC_Os12g18830NANA12+10907479..10910121retrotransposon protein, putative, unclassified
LOC_Os12g18840NANA12+10913871..10918073retrotransposon protein, putative, unclassified
LOC_Os12g18850OsAffx.31801.5.S1_at9/1112+10926473..10929185hypothetical protein
LOC_Os12g18850OsAffx.30013.1.S1_x_at1/1112+10926473..10929185hypothetical protein
LOC_Os12g18860Os.10568.1.S1_at11/1112+10932948..10939812expressed protein
LOC_Os12g18860Os.27155.1.S1_at1/1112+10932948..10939812expressed protein
LOC_Os12g18860OsAffx.2817.1.S1_at1/1112+10932948..10939812expressed protein
LOC_Os12g18870NANA12+10945860..10946163NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31801.5.S1_at--533--8311NONE
GGCTCGAACTTTCCAGTTTAGGAGT
NONE
OsAffx.31801.5.S1_at--831--10291NONE
TTTCCAGTTTAGGAGTTCACCATGG
NONE
OsAffx.31801.5.S1_at--1097--8031Chr12:10928023..10928047 (25 bp)
GGAGTTCACCATGGATTGATCAGAG
LOC_Os12g18850
OsAffx.31801.5.S1_at--320--9671Chr12:10928018..10928042 (25 bp)
TCACCATGGATTGATCAGAGAAGGC
LOC_Os12g18850
OsAffx.31801.5.S1_at--863--7431Chr12:10927977..10928001 (25 bp)
GTGTACAGCAGTGCGTGGAACTGCC
LOC_Os12g18850
OsAffx.31801.5.S1_at--129--5451Chr12:10927964..10927984 (21 bp)
GAACTGCCGGGCAACAGCGGGAATT
LOC_Os12g18850
OsAffx.31801.5.S1_at--693--8211Chr12:10927804..10927828 (25 bp)
GGAATTCGGTCTACGGATATGGGAA
LOC_Os12g18850
OsAffx.31801.5.S1_at--1030--10591Chr12:10927800..10927824 (25 bp)
TTCGGTCTACGGATATGGGAAAGCG
LOC_Os12g18850
OsAffx.31801.5.S1_at--159--1071Chr12:10927733..10927754 (22 bp)
AGGGTTCTCTTAAAGTCTGGTGGAG
LOC_Os12g18850
OsAffx.31801.5.S1_at--872--6711Chr12:10927536..10927751 (25 bp)
GTTCTCTTAAAGTCTGGTGGAGTCA
LOC_Os12g18850
OsAffx.31801.5.S1_at--394--2912Chr12:14675983..14676002 (20 bp)
AAGGACCAACTCAAGTCCTGCAGCT
NONE
Target Sequence 
GGCTCGAACTTTCCAGTTTAGGAGTTCACCATGGATTGATCAGAGAAGGCGGTGGCTCAGGCGGAGGTGTACAGCAGTGC
GTGGAACTGCCGGGCAACAGCGGGAATTCGGTCTACGGATATGGGAAAGCGTGGATGTTGGATTATTAGCTTGGTTCATA
AGACGACAAGGAAGAAAGGGTTCTCTTAAAGTCTGGTGGAGTCAAGAGAAAGAAATTACAGGGATAGCGGGAGTCTCTTG
TTACGGTGAGCCTGGTGGAGGCTTGTCGGGGCAGCTTGGCGTGAGCGGCGAAAAAGGACCAACTCAAGTCCTGCAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31801.5.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis