Browse Element(s) Details


Os.52950.1.S1_at

Description gb:AK070088.1
DB_XREF= gi:32980112
TID=Os.52950.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52950 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023040D23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023040D23, full insert sequence.
FL= gb:AK070088.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1881011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g18770Os.35068.1.S1_at11/1112+10859656..10869587Oxysterol-binding protein, expressed
LOC_Os12g18770Os.7268.1.S1_at1/1112+10859656..10869587Oxysterol-binding protein, expressed
LOC_Os12g18780OsAffx.2602.1.S1_at8/1112+10871779..10874766hypothetical protein
LOC_Os12g18780OsAffx.24341.1.S1_at7/1112+10871779..10874766hypothetical protein
LOC_Os12g18780Os.5300.1.S1_at1/1112+10871779..10874766hypothetical protein
LOC_Os12g18790OsAffx.19735.1.S1_at11/1112+10875919..10876454hypothetical protein
LOC_Os12g18800OsAffx.22702.1.S1_at1/1112+10882850..10885901transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g18800OsAffx.10473.1.S1_at1/1112+10882850..10885901transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g18810Os.52950.1.S1_at11/1112+10890652..10891472expressed protein
LOC_Os12g18820OsAffx.7636.1.S1_at11/1112+10898216..10904229Cytochrome P450 family protein
LOC_Os12g18820OsAffx.18297.1.S1_at1/1112+10898216..10904229Cytochrome P450 family protein
LOC_Os12g18830NANA12+10907479..10910121retrotransposon protein, putative, unclassified
LOC_Os12g18840NANA12+10913871..10918073retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52950.1.S1_at--968--8871Chr12:10891153..10891177 (25 bp)
TGATGGACGACATCTTCGAGCAGTT
LOC_Os12g18810
Os.52950.1.S1_at--539--1331Chr12:10890943..10890967 (25 bp)
AGAGGATGGCGAACGCCGACGTCTC
LOC_Os12g18810
Os.52950.1.S1_at--197--6051Chr12:10890860..10890884 (25 bp)
GAGATCTTCGGCTCGGATGCCTAGC
LOC_Os12g18810
Os.52950.1.S1_at--634--7971Chr12:10890846..10890870 (25 bp)
GGATGCCTAGCCTGGTATACTCTCT
LOC_Os12g18810
Os.52950.1.S1_at--28--8591Chr12:10890834..10890858 (25 bp)
TGGTATACTCTCTCTGATCTGATCT
LOC_Os12g18810
Os.52950.1.S1_at--95--811Chr12:10890804..10890828 (25 bp)
ATGGATTGGTTGCAATTTGCTTTGC
LOC_Os12g18810
Os.52950.1.S1_at--152--7931Chr12:10890762..10890786 (25 bp)
GGATATCTTCGGTTCGGAATTCGGA
LOC_Os12g18810
Os.52950.1.S1_at--1038--3891Chr12:10890748..10890772 (25 bp)
CGGAATTCGGATGCTAAGTCTGGTA
LOC_Os12g18810
Os.52950.1.S1_at--406--2851Chr12:10890733..10890757 (25 bp)
AAGTCTGGTAGTAATACACTATCTG
LOC_Os12g18810
Os.52950.1.S1_at--1111--2171Chr12:10890718..10890742 (25 bp)
ACACTATCTGATATCCCATGGATGA
LOC_Os12g18810
Os.52950.1.S1_at--941--11Chr12:10890693..10890717 (25 bp)
ATTGGTTGAAATTTGTTTGCTTTGA
LOC_Os12g18810
Target Sequence 
TGATGGACGACATCTTCGAGCAGTTCATCGAGAAGGACGAGCTGCTGGACCGGATCGGGGCCCGCCTCGTGGCGCCGCTG
CTCCCCGCCGCCACCCGGGCGCAGCGGCGGCAGGTCCTGGAGCAGAGGGAGCAGGCGCGCGCGGCGCGGGAGGAGCTCAG
GCGCGGCGTGGCGAGGAGCAGGGAGCTGACGAGGAAGATCAGGAGGCTCAAGAGGATGGCGAACGCCGACGTCTCCGGCT
ACCCCGCCGCGCGGCGGGAGGCGCACGAGAGGGAGACGCGGCGGCTCGCCCGGGAGATCTTCGGCTCGGATGCCTAGCCT
GGTATACTCTCTCTGATCTGATCTGATGGATGGATTGGTTGCAATTTGCTTTGCTTTGATTTGGAAAACAGGGATATCTT
CGGTTCGGAATTCGGATGCTAAGTCTGGTAGTAATACACTATCTGATATCCCATGGATGAATTGGTTGAAATTTGTTTGC
TTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52950.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis