Browse Element(s) Details


Os.7860.1.S1_at

Description gb:CB666183
DB_XREF= gi:29669908
DB_XREF=OSJNEd12P13.r
CLONE=OSJNEd12P13
TID=Os.7860.1
CNT=49
FEA=FLmRNA
TIER=Stack
STK=7
UG=Os.7860 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for oryzain gamma, complete cds
FL= gb:AK066748.1 gb:D90408.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g270309/11Cysteine proteinase 2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27000OsAffx.6079.1.S1_at1/119+16413732..16417998expressed protein
LOC_Os09g27010Os.49849.1.S1_at11/119+16421289..16424217Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os09g27020Os.51501.1.S2_x_at1/119+16434083..16434979hypothetical protein
LOC_Os09g27030Os.7860.1.S1_at9/119+16438141..16442625Cysteine proteinase 2 precursor, putative, expressed
LOC_Os09g27030OsAffx.4696.1.S1_at1/119+16438141..16442625Cysteine proteinase 2 precursor, putative, expressed
LOC_Os09g27040Os.54874.1.S1_at10/119+16443341..16446966GEX1, putative, expressed
LOC_Os09g27050Os.18226.1.S1_a_at11/119+16454049..16457584RSH2, putative, expressed
LOC_Os09g27060Os.6189.1.S1_s_at11/119+16460643..16466274chromatin complex subunit A101, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7860.1.S1_at--541--2731Chr09:16441726..16441750 (25 bp)
AAGAATGCTGTTGGACTTGTTCGTC
LOC_Os09g27030
Os.7860.1.S1_at--57--10611Chr09:16441745..16441769 (25 bp)
TTCGTCCAGTTAGTGTTGCCTTTCA
LOC_Os09g27030
Os.7860.1.S1_at--766--10671Chr09:16441760..16441784 (25 bp)
TTGCCTTTCAGGTGATCAACGGTTT
LOC_Os09g27030
Os.7860.1.S1_at--864--3911Chr09:16441981..16442005 (25 bp)
CTGGCCGTTGGCTATGGTGTCGAAA
LOC_Os09g27030
Os.7860.1.S1_at--285--7751Chr09:16441996..16442020 (25 bp)
GGTGTCGAAAATGGCGTTCCCTACT
LOC_Os09g27030
Os.7860.1.S1_at--1122--2491Chr09:16442089..16442221 (25 bp)
AACATGTGCGGTATTGCTACTTGCG
LOC_Os09g27030
Os.7860.1.S1_at--571--4971Chr09:16442221..16442245 (25 bp)
GCATCCTACCCTATTGTTGCATGAG
LOC_Os09g27030
Os.7860.1.S1_at--1100--3331Chr09:16442251..16442275 (25 bp)
CACGGATTAGTTCCATTGTGTCAAT
LOC_Os09g27030
Os.7860.1.S1_at--1157--7411NONE
GTGTCAATTTAGTTGGACCCTCAAT
NONE
Os.7860.1.S1_at--869--951NONE
AGGACATTGAATTAGCCCAGTGCAT
NONE
Os.7860.1.S1_at--9--7071Chr09:16442387..16442411 (25 bp)
GTAATCTTCTCCTGTATGGTTGTGT
LOC_Os09g27030
Target Sequence 
AAGAATGCTGTTGGACTTGTTCGTCCAGTTAGTGTTGCCTTTCAGGTGATCAACGGTTTCAGGATGTACAAGAGTGGAGT
TTACACAAGTGACCATTGTGGAACTTCTCCAATGGATGTGAACCACGCTGTTCTGGCCGTTGGCTATGGTGTCGAAAATG
GCGTTCCCTACTGGCTCATCAAGAACTCATGGGGTGCAGACTGGGGTGACAATGGTTACTTCAAGATGGAAATGGGCAAG
AACATGTGCGGTATTGCTACTTGCGCATCCTACCCTATTGTTGCATGAGGNTGCCCACGGATTAGTTCCATTGTGTCAAT
TTAGTTGGACCCTCAATAATATATTTTTCTGTCCAAGGATGAAGTATGGGTATACAGAAACTGAAACTTTCTTGTGAATA
TAAGATCATAAGGACATTGAATTAGCCCAGTGCATGTAATCTTCTCCTGTATGGTTGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7860.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis