Browse Element(s) Details


Os.7890.2.S1_x_at

Description gb:AK060222.1
DB_XREF= gi:32970240
TID=Os.7890.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7890 (NCBI UniGene Cluster)
UG_TITLE=Chlorophyll ab-binding protein presursor (Cab27) mRNA, nuclear gene encoding chloroplast protein, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-002-F08, full insert sequence.
FL= gb:AK060222.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3382011/11Chlorophyll a-b binding protein 4, chloroplast precursor, putative, expressed
LOC_Os03g421601/11hypothetical protein
LOC_Os04g159701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33800NANA8+21022682..21024933Myb-like DNA-binding domain containing protein
LOC_Os08g33810Os.50542.1.S1_at11/118+21032164..21036917Biotin/lipoate A/B protein ligase family protein, expressed
LOC_Os08g33820Os.7890.2.S1_x_at11/118+21038387..21039838Chlorophyll a-b binding protein 4, chloroplast precursor, putative, expressed
LOC_Os08g33820Os.7890.1.S1_a_at11/118+21038387..21039838Chlorophyll a-b binding protein 4, chloroplast precursor, putative, expressed
LOC_Os08g33820Os.7890.1.S1_x_at11/118+21038387..21039838Chlorophyll a-b binding protein 4, chloroplast precursor, putative, expressed
LOC_Os08g33830Os.10076.1.S1_at11/118+21040577..21046359Polypyrimidine tract-binding protein homolog 1, putative, expressed
LOC_Os08g33840OsAffx.6017.1.S1_at10/118+21052165..21053716hypothetical protein
LOC_Os08g33840OsAffx.20927.1.S1_x_at2/118+21052165..21053716hypothetical protein
LOC_Os08g33840OsAffx.26904.1.S1_x_at1/118+21052165..21053716hypothetical protein
LOC_Os08g33840OsAffx.20927.2.S1_at1/118+21052165..21053716hypothetical protein
LOC_Os08g33850Os.5241.1.S1_at11/118+21057383..21061481GDA1/CD39 family protein, expressed
LOC_Os08g33860Os.5671.1.S1_at11/118+21062021..21067288zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009768biological_processphotosynthesis, light harvesting in photosystem I
GO:0015979biological_processphotosynthesis
GO:0009782cellular_componentphotosystem I antenna complex
GO:0030076cellular_componentlight-harvesting complex
GO:0016168molecular_functionchlorophyll binding
GO:0031409molecular_functionpigment binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7890.2.S1_x_at--612--1291Chr08:21039191..21039215 (25 bp)
AGATCCGGCGGTGGCAGGACATCAA
LOC_Os08g33820
Os.7890.2.S1_x_at--753--951Chr08:21039176..21039200 (25 bp)
AGGACATCAAGAACCCTGGCTGCGT
LOC_Os08g33820
Os.7890.2.S1_x_at--102--971Chr08:21039146..21039170 (25 bp)
AGGACCCCATCTTCAAGAGCTACAG
LOC_Os08g33820
Os.7890.2.S1_x_at--718--3891Chr08:21038901..21038925 (25 bp)
CTGGTGCAGCACAACGTGACGCAGA
LOC_Os08g33820
Os.7890.2.S1_x_at--718--2211Chr08:21038864..21038888 (25 bp)
ACAACCTGCTGCAGCACCTGTCTGA
LOC_Os08g33820
Os.7890.2.S1_x_at--1062--2473Chr03:23414260..23414293 (24 bp)
AACACCATCATCCAGACGCTGTCAG
LOC_Os03g42160
Os.7890.2.S1_x_at--1127--7111Chr08:21038809..21038833 (25 bp)
GTCAGGCTGAGCGTGTGATCGATTT
LOC_Os08g33820
Os.7890.2.S1_x_at--491--7471Chr08:21038797..21038821 (25 bp)
GTGTGATCGATTTCATCAGGGCCAG
LOC_Os08g33820
Os.7890.2.S1_x_at--538--7751Chr08:21038532..21038556 (25 bp)
GGTGAATTTCTGATGTACAGTACTA
LOC_Os08g33820
Os.7890.2.S1_x_at--1150--7651Chr08:21038503..21038527 (25 bp)
GGGATAAACTATCTCATGGTAGCAG
LOC_Os08g33820
Os.7890.2.S1_x_at--620--451Chr08:21038493..21038517 (25 bp)
ATCTCATGGTAGCAGCAGTGTTCTA
LOC_Os08g33820
Target Sequence 
AGATCCGGCGGTGGCAGGACATCAAGAACCCTGGCTGCGTCAACCAGGACCCCATCTTCAAGAGCTACAGCCTCCCGCCG
CACGAGTGCGGCTACCCCGGCAGCGTCTTCAACCCCCTCAACTTCGAGCCCACCCTCGAGGCCAAGGAGAAGGAGCTCGC
CAACGGGAGGCTGGCGATGCTGGCGTTCTTGGGGTTCCTGGTGCAGCACAACGTGACGCAGAAGGGGCCCTTCGACAACC
TGCTGCAGCACCTGTCTGACCCGTGGCACAACACCATCATCCAGACGCTGTCAGGCTGAGCGTGTGATCGATTTCATCAG
GGCCAGGGCATCTCAAGGAGCTTGATGAGTTCAGGCTGGTGAAACCGATGATTGGGCGATGGAAGATGTTCTCTTCTTGT
TTCTTCTTTTTTTTTTGTGGAGTATGCATGTATAAGATGTTAATGAATTGGGGGGAGGAGAGAGAGAGAGATGGATGCAT
GGGTGAGGGGGTGAGTTGAGTGGTGAATTTCTGATGTACAGTACTACAGGGGGATAAACTATCTCATGGTAGCAGCAGTG
TTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7890.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis