Browse Element(s) Details


Os.7896.2.S1_at

Description gb:CB630483
DB_XREF= gi:29625472
DB_XREF=OSIIEb07H07.f
CLONE=OSIIEb07H07
TID=Os.7896.2
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.7896 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_566994.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3144010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g31390OsAffx.7753.1.S1_at11/1112+18855176..18855801hypothetical protein
LOC_Os12g31400OsAffx.31962.1.S1_at11/1112+18863067..18863711hypothetical protein
LOC_Os12g31410OsAffx.31962.1.S1_at2/1112+18864745..18866782expressed protein
LOC_Os12g31420OsAffx.7754.1.S1_x_at9/1112+18869607..18871005hypothetical protein
LOC_Os12g31430OsAffx.19913.1.S1_at11/1112+18875110..18876100Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g31430OsAffx.19913.1.S1_x_at11/1112+18875110..18876100Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g31440Os.7896.1.S1_at11/1112+18880310..18884363expressed protein
LOC_Os12g31440Os.7896.2.S1_at10/1112+18880310..18884363expressed protein
LOC_Os12g31450Os.49573.1.S1_at11/1112+18884734..18887126plastid division regulator MinE, putative, expressed
LOC_Os12g31460OsAffx.7755.1.S1_s_at11/1112+18889665..18892094DnaJ domain containing protein, expressed
LOC_Os12g31470NANA12+18894239..18902927retrotransposon protein, putative, unclassified
LOC_Os12g31480Os.24542.1.S1_at10/1112+18904325..18907546expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7896.2.S1_at--420--8671Chr12:18882149..18882169 (21 bp)
TGTGTGCTGCTTTTAGTCGAGTTAC
LOC_Os12g31440
Os.7896.2.S1_at--70--4591Chr12:18882270..18882294 (25 bp)
GCGCATATCCTTCCTGAATTTAAGC
LOC_Os12g31440
Os.7896.2.S1_at--316--2851Chr12:18882302..18882326 (25 bp)
AAGTCATCCGGAGCTTGTTCTACAA
LOC_Os12g31440
Os.7896.2.S1_at--747--10211Chr12:18882345..18882369 (25 bp)
TATTACTGTGTCTGTTTATGCGTCA
LOC_Os12g31440
Os.7896.2.S1_at--567--9651Chr12:18882619..18882643 (25 bp)
TCAGTTAGATGCTGGGTTTCCTCTT
LOC_Os12g31440
Os.7896.2.S1_at--74--4491Chr12:18882667..18882691 (25 bp)
GCCTGGCTTTGTGGAGTTTGATGAT
LOC_Os12g31440
Os.7896.2.S1_at--872--8151Chr12:18882698..18882722 (25 bp)
GGAAAAGTACTCACCTACTCAGCTC
LOC_Os12g31440
Os.7896.2.S1_at--102--131Chr12:18882854..18882878 (25 bp)
ATTCAATACCTGACACCAATGTGCA
LOC_Os12g31440
Os.7896.2.S1_at--1--9791NONE
TAAGTCCAGGAATCATGCTCTTGAT
NONE
Os.7896.2.S1_at--116--2171Chr12:18883012..18883036 (25 bp)
ACACCATGTCATGTTCCTTTGAAGA
LOC_Os12g31440
Os.7896.2.S1_at--1006--9651Chr12:18883073..18883097 (25 bp)
TCACGCATTTGTTGCACCGTAATAA
LOC_Os12g31440
Target Sequence 
TGTGTGCTGCTTTTAGTCGAGTTACAAATAAGCGCATATCCTTCCTGAATTTAAGCCCAGATGAAGTCATCCGGAGCTTG
TTCTACAACAAGAACAATGATTCACTTATTACTGTGTCTGTTTATGCGTCAGACCATTTTAGCNCATTGAAGTGCNNAAC
AACCCCNATCGAGTATATAAGGAGGAATCAGTTAGATGCTGGGTTTCCTCTTTTTGAAACAGAATCTCTGAAGTGGCCTG
GCTTTGTGGAGTTTGATGATGTGAATGGAAAAGTACTCACCTACTCAGCTCAGGATGGTATCTATAAGGTCTTCGATTTG
AAGAATTACTCTTTTCTATATTCAATACCTGACACCAATGTGCAGGAGATAAAAATAAGTCCAGGAATCATGCTCTTGAT
ATATGAAAGAACACCATGTCATGTTCCTTTGAAGATATTGTCAATTGAAGATGGAAGACCACTANAATCCTTCACGCATT
TGTTGCACCGTAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7896.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis