Browse Element(s) Details


Os.7930.1.S1_x_at

Description gb:AK058489.1
DB_XREF= gi:32968507
TID=Os.7930.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7930 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-016-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-016-D12, full insert sequence.
FL= gb:AK058489.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3737011/11Mitochondrial carrier protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37350Os.11306.1.S1_at11/118+23460857..23468289Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os08g37360OsAffx.17377.1.S1_at11/118+23471844..23472276hypothetical protein
LOC_Os08g37370OsAffx.6057.1.S1_s_at11/118+23480252..23481735Mitochondrial carrier protein, expressed
LOC_Os08g37370Os.7930.1.S1_x_at11/118+23480252..23481735Mitochondrial carrier protein, expressed
LOC_Os08g37380Os.23365.1.S1_at11/118+23490237..23495714Glucose-6-phosphate isomerase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005488molecular_functionbinding
GO:0017077molecular_functionoxidative phosphorylation uncoupler activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7930.1.S1_x_at--428--10771Chr08:23481490..23481514 (25 bp)
TTGATTTGGTTTCTTTCCGTCCGAT
LOC_Os08g37370
Os.7930.1.S1_x_at--130--6831Chr08:23481482..23481506 (25 bp)
GTTTCTTTCCGTCCGATTTGTGAAG
LOC_Os08g37370
Os.7930.1.S1_x_at--861--531Chr08:23481417..23481441 (25 bp)
ATCGCGTCCATCGTCGCTGGGTGCT
LOC_Os08g37370
Os.7930.1.S1_x_at--205--1851Chr08:23481390..23481414 (25 bp)
ACGCACCCGCTCGATTTGATTAAGG
LOC_Os08g37370
Os.7930.1.S1_x_at--1029--3251Chr08:23480482..23480506 (25 bp)
CAACGGCGTCGAGTTCTAAAGGCCA
LOC_Os08g37370
Os.7930.1.S1_x_at--1161--10511Chr08:23480469..23480493 (25 bp)
TTCTAAAGGCCACCGCCACGATGAT
LOC_Os08g37370
Os.7930.1.S1_x_at--606--5791Chr08:23480441..23480465 (25 bp)
GACGAACAATCCACCTCTAGTATTA
LOC_Os08g37370
Os.7930.1.S1_x_at--923--3011Chr08:23480434..23480458 (25 bp)
AATCCACCTCTAGTATTACTTCTGC
LOC_Os08g37370
Os.7930.1.S1_x_at--677--6051Chr08:23480349..23480373 (25 bp)
GAGATTGTACCTTAGCCTGCCTCCC
LOC_Os08g37370
Os.7930.1.S1_x_at--923--851Chr08:23480323..23480347 (25 bp)
ATGGCATATGTTCCTTCTGTTCCTG
LOC_Os08g37370
Os.7930.1.S1_x_at--33--3651Chr08:23480310..23480334 (25 bp)
CTTCTGTTCCTGCATTCGAACGAAT
LOC_Os08g37370
Target Sequence 
TTGATTTGGTTTCTTTCCGTCCGATTTGTGAAGAGGAGGAGCAATGGGGTTCAAGGGATTTGTGGAGGGTGGCATCGCGT
CCATCGTCGCTGGGTGCTCGACGCACCCGCTCGATTTGATTAAGGTGAGGATGCAGCTGCAGGGGGAGGCGTCGGCCGCC
CTACTCCGGCGCCATCGACTGCGCGCTCAAGACGGTGCGGTCGGAGGGCGTCATGGCGCTGNACAAGGGGTTCATNCCCC
ACCGTGTCGCGCCAGGGCCCCTTCACCGTCGTGCTCTTCGTCACGCTCGAGCAGGTGCGCAAGGTCTTCAACGGCGTCGA
GTTCTAAAGGCCACCGCCACGATGATGANGACGAACAATCCACCTCTAGTATTACTTCTGCTAGTACTACCTCTGCTGCT
GATGCTGCTGCTATGAATAATTACTACTACAGCCTGGTTGAGAGATTGTACCTTAGCCTGCCTCCCCATGGCATATGTTC
CTTCTGTTCCTGCATTCGAACGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7930.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis