Browse Element(s) Details


Os.8043.1.S1_at

Description gb:AK120822.1
DB_XREF= gi:37990445
TID=Os.8043.1
CNT=10
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.8043 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023019A20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019A20, full insert sequence.
FL= gb:AK120822.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5101011/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50980Os.19367.1.S1_at11/113+29077376..29085535Sumoylation ligase E3, putative, expressed
LOC_Os03g50990OsAffx.25674.1.S1_at11/113+29085918..29086310expressed protein
LOC_Os03g51000Os.46088.1.S1_s_at11/113+29088237..290961233,4-dihydroxy-2-butanone kinase, putative, expressed
LOC_Os03g51010Os.8043.1.S1_at11/113+29100698..29104260hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g51020Os.17861.1.S2_at11/113+29108530..29115730protein kinase, putative, expressed
LOC_Os03g51020Os.17861.1.S1_at11/113+29108530..29115730protein kinase, putative, expressed
LOC_Os03g51030Os.272.1.S1_at11/113+29118715..29126579Phytochrome A, putative, expressed
LOC_Os03g51030Os.47842.1.A1_s_at11/113+29118715..29126579Phytochrome A, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8043.1.S1_at--363--3191Chr03:29101219..29101243 (25 bp)
CAATCTGTACAACGGTCTGCTTCAT
LOC_Os03g51010
Os.8043.1.S1_at--575--2511Chr03:29101155..29101179 (25 bp)
AACATTGTGGATTGGCTGAGCCCGA
LOC_Os03g51010
Os.8043.1.S1_at--778--5871Chr03:29101138..29101162 (25 bp)
GAGCCCGAGGATTTGACAGCTGATA
LOC_Os03g51010
Os.8043.1.S1_at--664--7811Chr03:29101033..29101057 (25 bp)
GGTCTTTGATCATCTGCAGAGCCGA
LOC_Os03g51010
Os.8043.1.S1_at--345--2511Chr03:29100955..29100979 (25 bp)
AACATCATACCACGAGCATTGCTTC
LOC_Os03g51010
Os.8043.1.S1_at--619--9931Chr03:29100921..29100945 (25 bp)
TACGTGTTGCTGTAGTACCAGGCGA
LOC_Os03g51010
Os.8043.1.S1_at--1064--6251Chr03:29100895..29100919 (25 bp)
GATGGGTCGGCTTACTACTGTCGCC
LOC_Os03g51010
Os.8043.1.S1_at--1142--511Chr03:29100860..29100884 (25 bp)
ATCCCGGAATCCTTTTTGTTTGCAG
LOC_Os03g51010
Os.8043.1.S1_at--361--751Chr03:29100825..29100849 (25 bp)
ATGTAAGATTGTTCGTTTCGCCCTG
LOC_Os03g51010
Os.8043.1.S1_at--291--9751Chr03:29100776..29100800 (25 bp)
TAATTTAGATGCCTTTTACCCTCCG
LOC_Os03g51010
Os.8043.1.S1_at--58--6031Chr03:29100749..29100773 (25 bp)
GAGAGGAGACGTTTTCTGCGTTGCA
LOC_Os03g51010
Target Sequence 
CAATCTGTACAACGGTCTGCTTCATGATCTGCTCATCGAGCCCGAGAAGGAGAAGATCATGGACAACATTGTGGATTGGC
TGAGCCCGAGGATTTGACAGCTGATATCCATTCATAGGACGCAGTCTGATCGTCCGCGGAGCGCGGGGGCAGGATGAGCA
TCCCGGCCTCCCGATGGTGATGACNCGGTCTTTGATCATCTGCAGAGCCGAGGAGGGCGAGCGTTGCTGCAAGCCTGCGA
TGCTGCTGGCCTCCCGGCGTTGGTAACATCATACCACGAGCATTGCTTCTATCTATATTACGTGTTGCTGTAGTACCAGG
CGATGATGGGTCGGCTTACTACTGTCGCCTCCCCTTGGTATCCCGGAATCCTTTTTGTTTGCAGGGATACGCCTATGTAA
GATTGTTCGTTTCGCCCTGTGTGGCTGCATGTGTGGTGTCCAATAATTTAGATGCCTTTTACCCTCCGATGAGAGGAGAC
GTTTTCTGCGTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8043.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis