Browse Element(s) Details


Os.8093.1.S1_at

Description gb:AK100878.1
DB_XREF= gi:32986087
TID=Os.8093.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8093 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023127C21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023127C21, full insert sequence.
FL= gb:AK100878.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0831011/11ATPase 8, plasma membrane-type, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08270OsAffx.15308.1.S1_at11/116+4003935..4004619hypothetical protein
LOC_Os06g08280Os.53574.1.S1_at11/116+4007140..4012540Protein kinase domain containing protein, expressed
LOC_Os06g08280Os.37872.1.S1_at11/116+4007140..4012540Protein kinase domain containing protein, expressed
LOC_Os06g08290Os.49775.1.S1_at9/116+4015075..4018297terminal acidic SANT 1, putative, expressed
LOC_Os06g08300OsAffx.4765.1.S1_s_at3/116+4018886..4021127FAD-dependent oxidoreductase family protein, putative
LOC_Os06g08310Os.8093.2.S1_at11/116+4024531..4029376ATPase 8, plasma membrane-type, putative, expressed
LOC_Os06g08310Os.8093.1.S1_at11/116+4024531..4029376ATPase 8, plasma membrane-type, putative, expressed
LOC_Os06g08310Os.8093.2.S1_x_at11/116+4024531..4029376ATPase 8, plasma membrane-type, putative, expressed
LOC_Os06g08310OsAffx.5813.1.S1_x_at2/116+4024531..4029376ATPase 8, plasma membrane-type, putative, expressed
LOC_Os06g08320Os.12267.2.S1_s_at11/116+4032490..403317560S ribosomal protein L39, putative, expressed
LOC_Os06g08320Os.46185.1.S1_x_at1/116+4032490..403317560S ribosomal protein L39, putative, expressed
LOC_Os06g08329NANA6+4035587..4035761NA
LOC_Os06g08340Os.55579.1.S1_at11/116+4039785..4040764AP2 domain containing protein, expressed
LOC_Os06g08350OsAffx.15309.1.S1_at11/116+4050269..4051805expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009935biological_processnutrient import
GO:0015992biological_processproton transport
GO:0005886cellular_componentplasma membrane
GO:0008553molecular_functionhydrogen-exporting ATPase activity, phosphorylative mechanism
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8093.1.S1_at--182--4271Chr06:4025107..4025131 (25 bp)
CCTGGGTGTTTGTCTCGCGCACACG
LOC_Os06g08310
Os.8093.1.S1_at--1122--9311Chr06:4025004..4025028 (25 bp)
TCGCCGCCGGTAAGGAGGAGCTCTC
LOC_Os06g08310
Os.8093.1.S1_at--657--8051Chr06:4024786..4024810 (25 bp)
GGAGAGCTTGTTCATGTTGCCGTAA
LOC_Os06g08310
Os.8093.1.S1_at--794--691Chr06:4024773..4024797 (25 bp)
ATGTTGCCGTAAGCGTACGTCTCGT
LOC_Os06g08310
Os.8093.1.S1_at--545--1891Chr06:4024757..4024781 (25 bp)
ACGTCTCGTGTTTGCGTGGTTTTGA
LOC_Os06g08310
Os.8093.1.S1_at--583--2451Chr06:4024694..4024718 (25 bp)
AAAATTCAGTCCATCTGCTGGTATA
LOC_Os06g08310
Os.8093.1.S1_at--657--3551Chr06:4024660..4024684 (25 bp)
CATCTGTTCAGTTTTTCAGTACATA
LOC_Os06g08310
Os.8093.1.S1_at--826--1171Chr06:4024643..4024667 (25 bp)
AGTACATATATCTTGTCAACTGTGT
LOC_Os06g08310
Os.8093.1.S1_at--503--7091Chr06:4024629..4024653 (25 bp)
GTCAACTGTGTATATTTGTGCATGT
LOC_Os06g08310
Os.8093.1.S1_at--623--10831Chr06:4024614..4024638 (25 bp)
TTGTGCATGTCTATATATACCCTAT
LOC_Os06g08310
Os.8093.1.S1_at--1026--8674Chr09:13714141..13714160 (20 bp)
TGTGTAGATATACTCCCTCTGTTTT
NONE
Target Sequence 
CCTGGGTGTTTGTCTCGCGCACACGGNGTTCACGACACAAGGAGGAGGAGCTCACCCAGCCCCGCCGCCGCAACCGCCGC
CGCCGCCGCCGTCTCCGACCTCCTCGCCGCCGGTAAGGAGGAGCTCTCCGAGCAGGCCGCNAAGCGCGCCGAGGTCGCAA
GATCGACTCGGTGGTGAAGCTGAACGCCGGTGGCCGGAGAGCTTGTTCATGTTGCCGTAAGCGTACGTCTCGTGTTTGCG
TGGTTTTGAGCGGGAATGAGCTTGTGAGAAAAACAAAAAAAANAAAAAAAATTCAGTCCATCTGCTGGTATATACATATT
TCATCTGTTCAGTTTTTCAGTACATATATCTTGTCAACTGTGTATATTTGTGCATGTCTATATATACCCTATATACAAGT
GTTCAGTTGAAATTTGCAAATTGTGTAGATATACTCCCTCTGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8093.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis