Browse Element(s) Details


Os.8117.1.S1_at

Description gb:AK072736.1
DB_XREF= gi:32982759
TID=Os.8117.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8117 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-203-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023139D11, full insert sequence.
FL= gb:AK105815.1 gb:AK072736.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3607011/11Response regulator receiver domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g36054Os.17070.1.S1_at11/114+21818847..21824637Auxin response factor 1, putative, expressed
LOC_Os04g36058Os.35511.1.S1_at11/114+21826730..21829677expressed protein
LOC_Os04g36062Os.8117.2.S1_at11/114+21830525..21836758DUF482, putative, expressed
LOC_Os04g36070Os.8117.1.S1_at11/114+21836451..21840299Response regulator receiver domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000160biological_processtwo-component signal transduction system (phosphorelay)
GO:0006950biological_processresponse to stress
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009736biological_processcytokinin mediated signaling
GO:0010017biological_processred or far red light signaling pathway
GO:0010161biological_processred light signaling pathway
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0000156molecular_functiontwo-component response regulator activity
GO:0005515molecular_functionprotein binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8117.1.S1_at--122--3691Chr04:21837011..21837035 (25 bp)
CTTTGAGATTCTAACCTGGAGCTTG
LOC_Os04g36070
Os.8117.1.S1_at--894--6731Chr04:21836986..21837010 (25 bp)
GTTCTTCTTGGCCTTTGATTGATGA
LOC_Os04g36070
Os.8117.1.S1_at--624--5371Chr04:21836951..21836975 (25 bp)
GAAGAACCAATCCTTGTATCCTTGT
LOC_Os04g36070
Os.8117.1.S1_at--41--5031Chr04:21836909..21836933 (25 bp)
GCAGTATCTGATGTCCTTTTTGGTT
LOC_Os04g36070
Os.8117.1.S1_at--315--3671Chr04:21836894..21836918 (25 bp)
CTTTTTGGTTGGGATCTTGGCTGAT
LOC_Os04g36070
Os.8117.1.S1_at--417--131Chr04:21836856..21836880 (25 bp)
ATTCAGAGAGCTTTTTCCTTGCCCT
LOC_Os04g36070
Os.8117.1.S1_at--771--5151Chr04:21836816..21836840 (25 bp)
GCAACTCCTCACCTGTATTGTAGTT
LOC_Os04g36070
Os.8117.1.S1_at--270--10171Chr04:21836708..21836732 (25 bp)
TATCATAGTACACTTTCGCCTCAAC
LOC_Os04g36070
Os.8117.1.S1_at--105--3451Chr04:21836528..21836552 (25 bp)
CAGTATCATCTCCTTGTGGAGGCAT
LOC_Os04g36070
Os.8117.1.S1_at--1040--7951Chr04:21836502..21836526 (25 bp)
GGATCACCCATATTTTTGCTACTTC
LOC_Os04g36070
Os.8117.1.S1_at--489--4851Chr04:21836485..21836509 (25 bp)
GCTACTTCCACATCTTGAGTCATGA
LOC_Os04g36070
Target Sequence 
CTTTGAGATTCTAACCTGGAGCTTGGTTCTTCTTGGCCTTTGATTGATGAGAGGAGGGAGGAAGAACCAATCCTTGTATC
CTTGTACAAAAAGCATAATGAGGCAGTATCTGATGTCCTTTTTGGTTGGGATCTTGGCTGATATGTCGATGTGACATTCA
GAGAGCTTTTTCCTTGCCCTTTCCTTTCGCCGATGGCAACTCCTCACCTGTATTGTAGTTCAGATCCCATGAGAAAAGAA
CTACACAAGTTGACTAATGCAGCATCAGGTTCTTCTGATGGGAAAAGAAACAAAAATTGCAGATATCATAGTACACTTTC
GCCTCAACGGTTGTAAACTTGTAATCCCATTCAGATAGGCGAAACTGGGCAATAGAATGTTGTTTTTTCTTTCAGTTGTC
ACATTTCAAGCTAATGACTTGAGATTTTTAAATGACAGCTATTTACAAGCNTAGTAATGTACAACTGTGGGTTTACATAT
TCACAGTATCATCTCCTTGTGGAGGCATGGGATCACCCATATTTTTGCTACTTCCACATCTTGAGTCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8117.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis