Browse Element(s) Details


Os.8117.2.S1_at

Description gb:AK073492.1
DB_XREF= gi:32983515
TID=Os.8117.2
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8117 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-203-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033040F03, full insert sequence.
FL= gb:AK073492.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3606211/11DUF482, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g36050Os.18612.1.S1_s_at11/114+21802137..21807705transmembrane CLPTM1 family protein, putative, expressed
LOC_Os04g36050Os.18612.1.S1_x_at11/114+21802137..21807705transmembrane CLPTM1 family protein, putative, expressed
LOC_Os04g36050Os.18612.2.S1_at10/114+21802137..21807705transmembrane CLPTM1 family protein, putative, expressed
LOC_Os04g36054Os.17070.1.S1_at11/114+21818847..21824637Auxin response factor 1, putative, expressed
LOC_Os04g36058Os.35511.1.S1_at11/114+21826730..21829677expressed protein
LOC_Os04g36062Os.8117.2.S1_at11/114+21830525..21836758DUF482, putative, expressed
LOC_Os04g36070Os.8117.1.S1_at11/114+21836451..21840299Response regulator receiver domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8117.2.S1_at--633--10191Chr04:21836371..21836395 (25 bp)
TATTAAGGTCCTGCATGATTCCGGC
LOC_Os04g36062
Os.8117.2.S1_at--642--8791Chr04:21836386..21836410 (25 bp)
TGATTCCGGCCCATACAAGGAAGAT
LOC_Os04g36062
Os.8117.2.S1_at--885--5231Chr04:21836416..21836440 (25 bp)
GAACGAATTTTTGCTTACACAAGGG
LOC_Os04g36062
Os.8117.2.S1_at--1006--10111Chr04:21836480..21836504 (25 bp)
TATGTTCATGACTCAAGATGTGGAA
LOC_Os04g36062
Os.8117.2.S1_at--930--2251Chr04:21836512..21836536 (25 bp)
AAATATGGGTGATCCCATGCCTCCA
LOC_Os04g36062
Os.8117.2.S1_at--392--9011Chr04:21836553..21836577 (25 bp)
TGAATATGTAAACCCACAGTTGTAC
LOC_Os04g36062
Os.8117.2.S1_at--250--2211Chr04:21836653..21836677 (25 bp)
ACAACATTCTATTGCCCAGTTTCGC
LOC_Os04g36062
Os.8117.2.S1_at--537--4351Chr04:21836668..21836692 (25 bp)
CCAGTTTCGCCTATCTGAATGGGAT
LOC_Os04g36062
Os.8117.2.S1_at--566--2611Chr04:21836704..21836728 (25 bp)
AACCGTTGAGGCGAAAGTGTACTAT
LOC_Os04g36062
Os.8117.2.S1_at--518--1111Chr04:21836719..21836743 (25 bp)
AGTGTACTATGATATCTGCAATTTT
LOC_Os04g36062
Os.8117.2.S1_at--598--3831Chr04:21836734..21836758 (25 bp)
CTGCAATTTTTGTTTCTTTTCCCAT
LOC_Os04g36062
Target Sequence 
TATTAAGGTCCTGCATGATTCCGGCCCATACAAGGAAGATATACTGAACGAATTTTTGCTTACACAAGGGGATGGAGTGT
AGAACATCAAAGGAACTTACAGCTATGAATATGTTCATGACTCAAGATGTGGAAGTAGCAAAAATATGGGTGATCCCATG
CCTCCACAAGGAGATGATACTGTGAATATGTAAACCCACAGTTGTACATTACTAGGCTTGTAAATAGCTGTCATTTAAAA
ATCTCAAGTCATTAGCTTGAAATGTGACAACTGAAAGAAAAAACAACATTCTATTGCCCAGTTTCGCCTATCTGAATGGG
ATTACAAGTTTACAACCGTTGAGGCGAAAGTGTACTATGATATCTGCAATTTTTGTTTCTTTTCCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8117.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis