Browse Element(s) Details


Os.35511.1.S1_at

Description gb:AK067142.1
DB_XREF= gi:32977160
TID=Os.35511.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35511 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013095E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013095E05, full insert sequence.
FL= gb:AK067142.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3605811/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g36050Os.18612.1.S1_s_at11/114+21802137..21807705transmembrane CLPTM1 family protein, putative, expressed
LOC_Os04g36050Os.18612.1.S1_x_at11/114+21802137..21807705transmembrane CLPTM1 family protein, putative, expressed
LOC_Os04g36050Os.18612.2.S1_at10/114+21802137..21807705transmembrane CLPTM1 family protein, putative, expressed
LOC_Os04g36054Os.17070.1.S1_at11/114+21818847..21824637Auxin response factor 1, putative, expressed
LOC_Os04g36058Os.35511.1.S1_at11/114+21826730..21829677expressed protein
LOC_Os04g36062Os.8117.2.S1_at11/114+21830525..21836758DUF482, putative, expressed
LOC_Os04g36070Os.8117.1.S1_at11/114+21836451..21840299Response regulator receiver domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35511.1.S1_at--1138--1591Chr04:21829434..21829458 (25 bp)
AGCTGCGGCCTGGTGTGTTCTCTGT
LOC_Os04g36058
Os.35511.1.S1_at--1047--8671Chr04:21829447..21829471 (25 bp)
TGTGTTCTCTGTTCGTCCTAAATTC
LOC_Os04g36058
Os.35511.1.S1_at--1081--10531Chr04:21829451..21829475 (25 bp)
TTCTCTGTTCGTCCTAAATTCCGTC
LOC_Os04g36058
Os.35511.1.S1_at--430--7351Chr04:21829480..21829504 (25 bp)
GTGAACCTGTGGAAGTGTGTACTGT
LOC_Os04g36058
Os.35511.1.S1_at--1011--7451Chr04:21829494..21829518 (25 bp)
GTGTGTACTGTACCGCCAAATGGAG
LOC_Os04g36058
Os.35511.1.S1_at--687--1771Chr04:21829505..21829529 (25 bp)
ACCGCCAAATGGAGCATTACGCTTT
LOC_Os04g36058
Os.35511.1.S1_at--715--8071Chr04:21829515..21829539 (25 bp)
GGAGCATTACGCTTTGTGGCATGTC
LOC_Os04g36058
Os.35511.1.S1_at--174--151Chr04:21829520..21829544 (25 bp)
ATTACGCTTTGTGGCATGTCATAGT
LOC_Os04g36058
Os.35511.1.S1_at--424--2091Chr04:21829569..21829593 (25 bp)
ACATGCAATAGTTTATTTACGTTGA
LOC_Os04g36058
Os.35511.1.S1_at--1015--5551Chr04:21829642..21829666 (25 bp)
GAAAGCCAATTCAATTCTGTAACCA
LOC_Os04g36058
Os.35511.1.S1_at--769--3151Chr04:21829653..21829677 (25 bp)
CAATTCTGTAACCATACGAATCGGC
LOC_Os04g36058
Target Sequence 
AGCTGCGGCCTGGTGTGTTCTCTGTTCGTCCTAAATTCCGTCGCCNGTGAACCTGTGGAAGTGTGTACTGTACCGCCAAA
TGGAGCATTACGCTTTGTGGCATGTCATAGTTTATTTACTTTGAAATTGAATGTAACATGCAATAGTTTATTTACGTTGA
AATTGAATGTAACCATTTGTAAAATGCTCAAGTTGTTNATCTAAAACAGAAAGCCAATTCAATTCTGTAACCATACGAAT
CGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35511.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis