Browse Element(s) Details


Os.18612.2.S1_at

Description gb:AK070853.1
DB_XREF= gi:32980876
TID=Os.18612.2
CNT=25
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18612 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023064G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023064G12, full insert sequence.
FL= gb:AK070853.1 gb:AK059457.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3605010/11transmembrane CLPTM1 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g36020OsAffx.14168.1.S1_at11/114+21777251..21778510F-box domain containing protein
LOC_Os04g36030OsAffx.14169.1.S1_at11/114+21778951..21782471AIG1 family protein
LOC_Os04g36030Os.52782.1.S1_at1/114+21778951..21782471AIG1 family protein
LOC_Os04g36040Os.49521.1.S1_at11/114+21783468..21788376POT family protein, expressed
LOC_Os04g36040Os.22928.1.S1_x_at1/114+21783468..21788376POT family protein, expressed
LOC_Os04g36050Os.18612.1.S1_s_at11/114+21802137..21807705transmembrane CLPTM1 family protein, putative, expressed
LOC_Os04g36050Os.18612.1.S1_x_at11/114+21802137..21807705transmembrane CLPTM1 family protein, putative, expressed
LOC_Os04g36050Os.18612.2.S1_at10/114+21802137..21807705transmembrane CLPTM1 family protein, putative, expressed
LOC_Os04g36054Os.17070.1.S1_at11/114+21818847..21824637Auxin response factor 1, putative, expressed
LOC_Os04g36058Os.35511.1.S1_at11/114+21826730..21829677expressed protein
LOC_Os04g36062Os.8117.2.S1_at11/114+21830525..21836758DUF482, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18612.2.S1_at--1035--9391Chr04:21802203..21802227 (25 bp)
TCGTTTATTGATCCGTCATCTGACA
LOC_Os04g36050
Os.18612.2.S1_at--1078--6811Chr04:21802201..21802225 (25 bp)
GTTTATTGATCCGTCATCTGACATT
LOC_Os04g36050
Os.18612.2.S1_at--667--51Chr04:21802197..21802221 (25 bp)
ATTGATCCGTCATCTGACATTTTGT
LOC_Os04g36050
Os.18612.2.S1_at--244--6371Chr04:21802194..21802218 (25 bp)
GATCCGTCATCTGACATTTTGTTAA
LOC_Os04g36050
Os.18612.2.S1_at--281--4251Chr04:21802191..21802215 (25 bp)
CCGTCATCTGACATTTTGTTAAATG
LOC_Os04g36050
Os.18612.2.S1_at--853--751Chr04:21802169..21802193 (25 bp)
ATGTACTAATGTAGTCATTTTTTGA
LOC_Os04g36050
Os.18612.2.S1_at--347--10351Chr04:21802151..21802175 (25 bp)
TTTTTGAACGGCTAGATTTCTCGCG
LOC_Os04g36050
Os.18612.2.S1_at--317--10271Chr04:21802149..21802173 (25 bp)
TTTGAACGGCTAGATTTCTCGCGGC
LOC_Os04g36050
Os.18612.2.S1_at--620--5451Chr04:21802146..21802170 (25 bp)
GAACGGCTAGATTTCTCGCGGCCTT
LOC_Os04g36050
Os.18612.2.S1_at--385--8311Chr04:21802142..21802166 (25 bp)
GGCTAGATTTCTCGCGGCCTTGATA
LOC_Os04g36050
Os.18612.2.S1_at--536--10311Chr04:21802135..21802159 (25 bp)
TTTCTCGCGGCCTTGATAAGCCTAA
NONE
Target Sequence 
TCGTTTATTGATCCGTCATCTGACATTTTGTTAAATGTACTAATGTAGTCATTTTTTGAACGGCTAGATTTCTCGCGGCC
TTGATAAGCCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18612.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis