Browse Element(s) Details


OsAffx.14168.1.S1_at

Description tigr:9632.m03473
TID=OsAffx.14168.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3602011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35990OsAffx.14167.1.S1_at9/114+21754818..21759223F-box domain containing protein
LOC_Os04g35990OsAffx.26351.1.S1_at1/114+21754818..21759223F-box domain containing protein
LOC_Os04g36000OsAffx.26351.1.S1_at10/114+21761415..21764449F-box domain containing protein
LOC_Os04g36010OsAffx.26352.1.S1_at11/114+21769611..21773722hypothetical protein
LOC_Os04g36020OsAffx.14168.1.S1_at11/114+21777251..21778510F-box domain containing protein
LOC_Os04g36030OsAffx.14169.1.S1_at11/114+21778951..21782471AIG1 family protein
LOC_Os04g36030Os.52782.1.S1_at1/114+21778951..21782471AIG1 family protein
LOC_Os04g36040Os.49521.1.S1_at11/114+21783468..21788376POT family protein, expressed
LOC_Os04g36040Os.22928.1.S1_x_at1/114+21783468..21788376POT family protein, expressed
LOC_Os04g36050Os.18612.1.S1_s_at11/114+21802137..21807705transmembrane CLPTM1 family protein, putative, expressed
LOC_Os04g36050Os.18612.1.S1_x_at11/114+21802137..21807705transmembrane CLPTM1 family protein, putative, expressed
LOC_Os04g36050Os.18612.2.S1_at10/114+21802137..21807705transmembrane CLPTM1 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14168.1.S1_at--1156--5991Chr04:21778165..21778189 (25 bp)
GAGAGGCTCCGAGGTTTCACCGCCA
LOC_Os04g36020
OsAffx.14168.1.S1_at--190--5671Chr04:21777864..21777888 (25 bp)
GACATGGAGCTCGACCGGTGCAAGT
LOC_Os04g36020
OsAffx.14168.1.S1_at--721--7771Chr04:21777848..21777872 (25 bp)
GGTGCAAGTGCTTCTTCCACGAGCT
LOC_Os04g36020
OsAffx.14168.1.S1_at--608--1151Chr04:21777791..21777815 (25 bp)
AGTCGTGCCTCTGGATGCGGAGACC
LOC_Os04g36020
OsAffx.14168.1.S1_at--928--1371Chr04:21777771..21777795 (25 bp)
AGACCGTCGGGCACGAATGGCGACA
LOC_Os04g36020
OsAffx.14168.1.S1_at--582--2951Chr04:21777756..21777780 (25 bp)
AATGGCGACAGGACCGTGTCCGTCG
LOC_Os04g36020
OsAffx.14168.1.S1_at--526--3491Chr04:21777690..21777714 (25 bp)
CATGGCGATTGCAAGGTTTTCCGTT
LOC_Os04g36020
OsAffx.14168.1.S1_at--654--6371Chr04:21777634..21777658 (25 bp)
GATCCGCGGAGGTTTCAACCTGATC
LOC_Os04g36020
OsAffx.14168.1.S1_at--1119--8831Chr04:21777614..21777638 (25 bp)
TGATCAATCTGTTCAGGCTCCTCCG
LOC_Os04g36020
OsAffx.14168.1.S1_at--414--1891Chr04:21777578..21777602 (25 bp)
ACGTCACGACTCTCAGATTGTCAGG
LOC_Os04g36020
OsAffx.14168.1.S1_at--96--10251Chr04:21777307..21777576 (25 bp)
TTTGGTCCAACTTCAGTATCTGCGA
LOC_Os04g36020
Target Sequence 
GAGAGGCTCCGAGGTTTCACCGCCAGGCTGCTCATGTACCACGCCGCCCCGGTGCTCGACGCGTTCCGCCTGCGCGTCGC
CACCCCCTTCCACCGCCGCGCGGACGTCGAGAGCTGGTCCGCCTTCGCCGGCGACCTATTGTCCGGCTGCCCCGCGCTGG
TGGACATGGAGCTCGACCGGTGCAAGTGCTTCTTCCACGAGCTCAGCTCCGCCACGCTGCGGAGCTTGGCCATGGAGTCG
TGCCTCTGGATGCGGAGACCGTCGGGCACGAATGGCGACAGGACCGTGTCCGTCGTGGCGCCTCGGCTCGCTTATCTTCG
CCTGCTCACCTTCGGCCATGGCGATTGCAAGGTTTTCCGTTTCGAGAGTGGCGACTCCATCTCCGAGGTCTCGATCCGCG
GAGGTTTCAACCTGATCAATCTGTTCAGGCTCCTCCGCATGATGCCCAACGTCACGACTCTCAGATTGTCAGGATTTGGT
CCAACTTCAGTATCTGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14168.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis