Browse Element(s) Details


OsAffx.14167.1.S1_at

Description tigr:9632.m03470
TID=OsAffx.14167.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g359909/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35950NANA4+21728660..21734783retrotransposon protein, putative, unclassified
LOC_Os04g35960NANA4+21735669..21738702retrotransposon protein, putative, unclassified
LOC_Os04g35970OsAffx.26350.1.S1_at11/114+21742721..21746176F-box domain containing protein
LOC_Os04g35980NANA4+21749621..21751791retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g35990OsAffx.14167.1.S1_at9/114+21754818..21759223F-box domain containing protein
LOC_Os04g35990OsAffx.26351.1.S1_at1/114+21754818..21759223F-box domain containing protein
LOC_Os04g36000OsAffx.26351.1.S1_at10/114+21761415..21764449F-box domain containing protein
LOC_Os04g36010OsAffx.26352.1.S1_at11/114+21769611..21773722hypothetical protein
LOC_Os04g36020OsAffx.14168.1.S1_at11/114+21777251..21778510F-box domain containing protein
LOC_Os04g36030OsAffx.14169.1.S1_at11/114+21778951..21782471AIG1 family protein
LOC_Os04g36030Os.52782.1.S1_at1/114+21778951..21782471AIG1 family protein
LOC_Os04g36040Os.49521.1.S1_at11/114+21783468..21788376POT family protein, expressed
LOC_Os04g36040Os.22928.1.S1_x_at1/114+21783468..21788376POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14167.1.S1_at--393--6471Chr04:21757644..21757668 (25 bp)
GATAAATCCCAATCATTCCACAACC
LOC_Os04g35990
OsAffx.14167.1.S1_at--760--3111Chr04:21757565..21757589 (25 bp)
AATTCAGGGCTCTCGGAAAGTTGCT
LOC_Os04g35990
OsAffx.14167.1.S1_at--432--7471NONE
GTGGGCTCTGTCTCGAAAATTTCTC
NONE
OsAffx.14167.1.S1_at--374--6331Chr04:21756763..21756787 (25 bp)
GATGCAGCGTTGGATTCTTGGCAGC
LOC_Os04g35990
OsAffx.14167.1.S1_at--1092--5051Chr04:21756743..21756767 (25 bp)
GCAGCCTGTTCGACCAATTTTATCT
LOC_Os04g35990
OsAffx.14167.1.S1_at--706--171Chr04:21756727..21756751 (25 bp)
ATTTTATCTTTACAGCGCCTTGAGG
LOC_Os04g35990
OsAffx.14167.1.S1_at--850--3871Chr04:21756517..21756541 (25 bp)
CTGTAGTATTGCTTCGTCAGCGAAC
LOC_Os04g35990
OsAffx.14167.1.S1_at--421--7111NONE
GTCAGCGAACGTTGTGATTTCAGAA
NONE
OsAffx.14167.1.S1_at--1006--2751Chr04:21754897..21754921 (25 bp)
AAGACGGCGAGACGGACCTTGATTC
LOC_Os04g35990
OsAffx.14167.1.S1_at--358--7251Chr04:21754871..21754895 (25 bp)
GTCCCTGATCCTCATGATTTCAACA
LOC_Os04g35990
OsAffx.14167.1.S1_at--953--6511Chr04:21754856..21754880 (25 bp)
GATTTCAACACTTCACAATGTCCGA
LOC_Os04g35990
Target Sequence 
GATAAATCCCAATCATTCCACAACCTGAGAACCTTGTCACTAGACAATTGTTTTCAAGCTGAAGGTGATTTGAAGGACAA
ATTCAGGGCTCTCGGAAAGTTGCTAGAAATGTGTCCTAATTTGGAGAAGCTTACATTGCAGCATTGCTGGTTTTTAGGAG
GTTCTACTCAAAGGGCAAAGAGAAAGACCAGAACGAGTGGGCTCTGTCTCGAAAATTTCTCTGAAACCCTAGGAGATGCA
GACGTGGATGCAGCGTTGGATTCTTGGCAGCCTGTTCGACCAATTTTATCTTTACAGCGCCTTGAGGATAAGGTGACGTT
TGTTCAGGAACCTGATGAATTATCAATGTTCTATAACCTGAAGAGAGCTTGTTGCTGTAGTATTGCTTCGTCAGCGAACG
TTGTGATTTCAGAACGTCTCAAAAGGGGTGAAGACGGCGAGACGGACCTTGATTCTGTCCCTGATCCTCATGATTTCAAC
ACTTCACAATGTCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14167.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis