Browse Element(s) Details


Os.8139.1.S1_at

Description gb:AK069281.1
DB_XREF= gi:32979305
TID=Os.8139.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8139 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023011F14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023011F14, full insert sequence.
FL= gb:AK069281.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2949011/11Peroxidase 17 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29470Os.17010.1.S1_at11/119+17917776..17922862expressed protein
LOC_Os09g29480Os.49579.1.S1_at11/119+17928688..17931489expressed protein
LOC_Os09g29480Os.55301.1.S1_x_at10/119+17928688..17931489expressed protein
LOC_Os09g29490Os.8139.1.S1_at11/119+17931692..17934813Peroxidase 17 precursor, putative, expressed
LOC_Os09g29500NANA9+17942680..17945479retrotransposon protein, putative, unclassified
LOC_Os09g29510OsAffx.30080.1.S1_at11/119+17948935..17953034Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009624biological_processresponse to nematode
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8139.1.S1_at--1043--7491Chr09:17931917..17931941 (25 bp)
GTGGTCCTGGTGGACTTCTGACGAA
LOC_Os09g29490
Os.8139.1.S1_at--656--5691Chr09:17931905..17931929 (25 bp)
GACTTCTGACGAACGAGCTGCTAGT
LOC_Os09g29490
Os.8139.1.S1_at--958--1991Chr09:17931874..17931898 (25 bp)
ACTCCCCAGCTGTTGGTGTTCGAGA
LOC_Os09g29490
Os.8139.1.S1_at--824--7411Chr09:17931859..17931883 (25 bp)
GTGTTCGAGAGGAGCTGCTCAGATA
LOC_Os09g29490
Os.8139.1.S1_at--43--6111Chr09:17931831..17931855 (25 bp)
GAGTGTTGTGGCTATTCATATATGA
LOC_Os09g29490
Os.8139.1.S1_at--762--10391Chr09:17931804..17931828 (25 bp)
TTTTGGTCCGATGGCAGGTTTGCAC
LOC_Os09g29490
Os.8139.1.S1_at--555--6851Chr09:17931787..17931811 (25 bp)
GTTTGCACCTACCTGTAAGCTTGTG
LOC_Os09g29490
Os.8139.1.S1_at--372--4931Chr09:17931769..17931793 (25 bp)
GCTTGTGATTTCAGGGTTACCCGCT
LOC_Os09g29490
Os.8139.1.S1_at--673--9951Chr09:17931752..17931776 (25 bp)
TACCCGCTTATTGCCGATTATTGAA
LOC_Os09g29490
Os.8139.1.S1_at--539--5591Chr09:17931710..17931734 (25 bp)
GAAATCGAGCTAATGATCATTGCCT
LOC_Os09g29490
Os.8139.1.S1_at--1082--8831Chr09:17931697..17931721 (25 bp)
TGATCATTGCCTGATGTGGTTTGGT
LOC_Os09g29490
Target Sequence 
GTGGTCCTGGTGGACTTCTGACGAACGAGCTGCTAGTCCCCTGACTCCCCAGCTGTTGGTGTTCGAGAGGAGCTGCTCAG
ATATGAGAGTGTTGTGGCTATTCATATATGAGTTTTTGGTCCGATGGCAGGTTTGCACCTACCTGTAAGCTTGTGATTTC
AGGGTTACCCGCTTATTGCCGATTATTGAATGGTGATAAATAACTGAGAAATCGAGCTAATGATCATTGCCTGATGTGGT
TTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8139.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis