Browse Element(s) Details


OsAffx.30080.1.S1_at

Description tigr:9637.m02620
TID=OsAffx.30080.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2951011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29480Os.49579.1.S1_at11/119+17928688..17931489expressed protein
LOC_Os09g29480Os.55301.1.S1_x_at10/119+17928688..17931489expressed protein
LOC_Os09g29490Os.8139.1.S1_at11/119+17931692..17934813Peroxidase 17 precursor, putative, expressed
LOC_Os09g29500NANA9+17942680..17945479retrotransposon protein, putative, unclassified
LOC_Os09g29510OsAffx.30080.1.S1_at11/119+17948935..17953034Protein kinase domain containing protein, expressed
LOC_Os09g29520Os.51022.1.A1_at11/119+17960168..17961784wall-associated kinase 3, putative, expressed
LOC_Os09g29530NANA9+17965322..17965573hypothetical protein
LOC_Os09g29540Os.39294.1.S1_at11/119+17967401..17970303Protein kinase domain containing protein, expressed
LOC_Os09g29550Os.4183.1.S1_a_at1/119+17973076..17973300hypothetical protein
LOC_Os09g29560Os.39294.1.S1_at2/119+17975722..17978389Calcium binding EGF domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30080.1.S1_at--1142--9231Chr09:17949504..17949528 (25 bp)
TCCTCAAATATCCTCTTAGACAAAG
LOC_Os09g29510
OsAffx.30080.1.S1_at--164--2331Chr09:17949468..17949492 (25 bp)
AAAGTTTCTGACTTCGGTGCTTCCA
LOC_Os09g29510
OsAffx.30080.1.S1_at--653--1971Chr09:17949432..17949456 (25 bp)
ACTGATGAGTCGCAGTTCGTCACTC
LOC_Os09g29510
OsAffx.30080.1.S1_at--91--10631Chr09:17949417..17949441 (25 bp)
TTCGTCACTCTCGTTCAAGGAACTT
LOC_Os09g29510
OsAffx.30080.1.S1_at--738--6791Chr09:17949318..17949342 (25 bp)
GTTATTCTAGAATTGCTCACAAGAA
LOC_Os09g29510
OsAffx.30080.1.S1_at--366--2711Chr09:17949290..17949314 (25 bp)
AAGCATTCAACCTTGAAAGCCCTGA
LOC_Os09g29510
OsAffx.30080.1.S1_at--631--8071Chr09:17949257..17949281 (25 bp)
GGAGCCTAGCCATGAGGTTTCTATC
LOC_Os09g29510
OsAffx.30080.1.S1_at--147--6151Chr09:17949244..17949268 (25 bp)
GAGGTTTCTATCAGCCATGAAGGAA
LOC_Os09g29510
OsAffx.30080.1.S1_at--358--5351Chr09:17949093..17949117 (25 bp)
GAAGTTGCAGACAAGCTCGATAGGT
LOC_Os09g29510
OsAffx.30080.1.S1_at--1029--9211Chr09:17949049..17949073 (25 bp)
TCCATGGGCACAACAAAATCCTGAA
LOC_Os09g29510
OsAffx.30080.1.S1_at--610--7631Chr09:17949005..17949029 (25 bp)
GGGACTCTTCTTACGAGATCAACAA
LOC_Os09g29510
Target Sequence 
TCCTCAAATATCCTCTTAGACAAAGATTATGTAGCAAAAGTTTCTGACTTCGGTGCTTCCATCCTAGCACCAACTGATGA
GTCGCAGTTCGTCACTCTCGTTCAAGGAACTTGTGGATACCTCGATCCAGAGTACATGCAAACATGCCAGTTAACAGATA
AAAGTGATGTATATAGCTTTGGAGTTGTTATTCTAGAATTGCTCACAAGAAAGAAAGCATTCAACCTTGAAAGCCCTGAA
GATGAGAGGAGCCTAGCCATGAGGTTTCTATCAGCCATGAAGGAAAAAAGACTTTCTGATATTTTAGATGATCAAATCAT
GACGGGAGATAATTTGGAGTTTCTTGAAGAGATTGCAGAGTTAGCAAAGCAATGCTTGGAAATGTCTGGTGAGAATAGAC
CGTTGATGAAGGAAGTTGCAGACAAGCTCGATAGGTTGAGGAAGGTAATGCAACATCCATGGGCACAACAAAATCCTGAA
GAGATGGAGAGCTTACTTGGGGACTCTTCTTACGAGATCAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30080.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis