Browse Element(s) Details


Os.8259.1.S1_at

Description gb:AK061728.1
DB_XREF= gi:32971746
TID=Os.8259.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.8259 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001H15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-038-B11, full insert sequence.
FL= gb:AK065038.1 gb:AK061728.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3176011/11Annexin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31730OsAffx.4492.1.S1_at11/115+18394382..18398339Sodium/hydrogen exchanger family protein, expressed
LOC_Os05g31730OsAffx.4492.1.S1_x_at11/115+18394382..18398339Sodium/hydrogen exchanger family protein, expressed
LOC_Os05g31740Os.54911.1.S1_at11/115+18406188..18408080Cytochrome P450 family protein, expressed
LOC_Os05g31750Os.22783.1.S1_s_at11/115+18413191..18414870Annexin family protein, expressed
LOC_Os05g31750Os.38017.1.S1_s_at11/115+18413191..18414870Annexin family protein, expressed
LOC_Os05g31760Os.8259.1.S1_at11/115+18419551..18421971Annexin family protein, expressed
LOC_Os05g31770Os.13632.1.S1_at11/115+18421530..18424750Tetratricopeptide repeat protein 11, putative, expressed
LOC_Os05g31780Os.18281.1.S1_at11/115+18427306..18431560Adaptor complexes medium subunit family protein, expressed
LOC_Os05g31800NANA5+18443340..18444094hypothetical protein
LOC_Os05g31810NANA5+18444499..18444810hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0015774biological_processpolysaccharide transport
GO:0009928cellular_componentcell surface (sensu Magnoliophyta)
GO:0005509molecular_functioncalcium ion binding
GO:0005544molecular_functioncalcium-dependent phospholipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8259.1.S1_at--727--1751Chr05:18420996..18421020 (25 bp)
ACCTCGCCGGAGAAGCATTTCGCTG
LOC_Os05g31760
Os.8259.1.S1_at--751--4951Chr05:18421010..18421520 (25 bp)
GCATTTCGCTGAGGTGATCCGGACA
LOC_Os05g31760
Os.8259.1.S1_at--690--6371Chr05:18421511..18421535 (25 bp)
GATCCGGACATCGATTCTAGGGCTT
LOC_Os05g31760
Os.8259.1.S1_at--1074--111Chr05:18421524..18421548 (25 bp)
ATTCTAGGGCTTGGCACCGACGAGG
LOC_Os05g31760
Os.8259.1.S1_at--705--7691Chr05:18421665..18421689 (25 bp)
GGGTACTACATGAACACGCTTCTCA
LOC_Os05g31760
Os.8259.1.S1_at--665--1691Chr05:18421711..18421735 (25 bp)
AGCCATGTAGCAGCTTGGACATTTT
LOC_Os05g31760
Os.8259.1.S1_at--813--8131Chr05:18421727..18421751 (25 bp)
GGACATTTTATTGCTTGCTCATTTG
LOC_Os05g31760
Os.8259.1.S1_at--1046--331Chr05:18421763..18421787 (25 bp)
ATACACCGTGTGATGTTGCAGTTAT
LOC_Os05g31760
Os.8259.1.S1_at--1122--831Chr05:18421837..18421861 (25 bp)
ATGGAGCATGTTTTATCGCACCGTG
LOC_Os05g31760
Os.8259.1.S1_at--553--5091Chr05:18421854..18421878 (25 bp)
GCACCGTGGTGTATCCAACACTTGT
LOC_Os05g31760
Os.8259.1.S1_at--1080--3251Chr05:18421869..18421893 (25 bp)
CAACACTTGTTTTCAGACGATACTA
LOC_Os05g31760
Target Sequence 
ACCTCGCCGGAGAAGCATTTCGCTGAGGTGATCCGGACATCGATTCTAGGGCTTGGCACCGACGAGGAGATGCTGACGAG
AGGGATCGTGTCGCGGGCGGAGGTGGACATGGAGAAGGTGAAGGAGGAGTACAAGGTCAGGTACAACACCACGGTCACCG
CCGACGTCCGCGGCGACACGTCGGGGTACTACATGAACACGCTTCTCACCCTCGTCGGCCCTGAGAAGTAGCCATGTAGC
AGCTTGGACATTTTATTGCTTGCTCATTTGATTTGAACAAAATACACCGTGTGATGTTGCAGTTATTAGTAAAATGCGAG
TAGGATCGATGTTGTTTTCGTTGGGTGGATTAATAATGGAGCATGTTTTATCGCACCGTGGTGTATCCAACACTTGTTTT
CAGACGATACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8259.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis