Browse Element(s) Details


Os.8266.1.A1_at

Description gb:AB116527.1
DB_XREF= gi:41351506
GEN=aos
TID=Os.8266.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8266 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) aos mRNA for allene oxide synthase, complete cds.
PROD=allene oxide synthase
FL= gb:AK068620.1 gb:AB116527.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5580011/11Cytochrome P450 74A1, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55750OsAffx.6388.1.S1_x_at11/113+31684561..31686391hypothetical protein
LOC_Os03g55750OsAffx.6388.1.S1_at11/113+31684561..31686391hypothetical protein
LOC_Os03g55760Os.55608.1.S1_at11/113+31688428..31694221myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os03g55770Os.428.1.S1_at2/113+31694949..31695203expressed protein
LOC_Os03g55784Os.4995.1.S1_at7/113+31697109..31700416expressed protein
LOC_Os03g55784Os.8266.2.S1_at7/113+31697109..31700416expressed protein
LOC_Os03g55800Os.8266.1.A1_at11/113+31703932..31705926Cytochrome P450 74A1, chloroplast precursor, putative, expressed
LOC_Os03g55810NANA3+31714944..31715444hypothetical protein
LOC_Os03g55820Os.7451.1.S1_at11/113+31717263..31720334Thioredoxin family protein, expressed
LOC_Os03g55830Os.57276.1.S1_at11/113+31724092..31727019transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g55840Os.53613.1.S1_at10/113+31727027..31728145expressed protein
LOC_Os03g55850Os.8017.1.S1_at11/113+31729548..31732200cold acclimation protein COR413-PM1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0019373biological_processepoxygenase P450 pathway
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0009978molecular_functionallene oxide synthase activity
GO:0016836molecular_functionhydro-lyase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8266.1.A1_at--1007--7831Chr03:31704453..31704477 (25 bp)
GGTACCAGCCCATGGCGACCAAGGA
LOC_Os03g55800
Os.8266.1.A1_at--437--6071Chr03:31704403..31704427 (25 bp)
GAGTACGTGCCGGACAGGTTCCTCG
LOC_Os03g55800
Os.8266.1.A1_at--976--9411Chr03:31704348..31704372 (25 bp)
TCGTGTGGTCCAACGGGCCCGAGAC
LOC_Os03g55800
Os.8266.1.A1_at--622--1851Chr03:31704306..31704330 (25 bp)
ACGACAAGCAGTGCGCCGGCAAGGA
LOC_Os03g55800
Os.8266.1.A1_at--596--6371Chr03:31704234..31704258 (25 bp)
GATACGACTCCTTCGACGTCGAGGT
LOC_Os03g55800
Os.8266.1.A1_at--452--7791Chr03:31704120..31704144 (25 bp)
GGTCATCTTATTTTCCGTCCTCTTC
LOC_Os03g55800
Os.8266.1.A1_at--613--4291Chr03:31704102..31704126 (25 bp)
CCTCTTCTTCTTCACTAAATATTTT
LOC_Os03g55800
Os.8266.1.A1_at--1066--1151Chr03:31704068..31704092 (25 bp)
AGTAATTTTTTCACTCTGTATGGTG
LOC_Os03g55800
Os.8266.1.A1_at--396--9691Chr03:31704058..31704082 (25 bp)
TCACTCTGTATGGTGTGATCAATCA
LOC_Os03g55800
Os.8266.1.A1_at--249--3191Chr03:31704039..31704063 (25 bp)
CAATCAGCTTGTACGGATACGGAGT
LOC_Os03g55800
Os.8266.1.A1_at--292--1931Chr03:31704027..31704051 (25 bp)
ACGGATACGGAGTTGCACTGGTAGT
LOC_Os03g55800
Target Sequence 
GGTACCAGCCCATGGCGACCAAGGACCCGCGGGTGTTCGCGCGGCCGGAGGAGTACGTGCCGGACAGGTTCCTCGGCGAG
GACGGCGCGCGGCTGCTCCGCCACGTCGTGTGGTCCAACGGGCCCGAGACGGCGGCGCCCACCCTGCACGACAAGCAGTG
CGCCGGCAAGGACTTCGTCGTGCTCGTCGCGCGCCTCCTCCTCGTCGAGCTCTTCCTCCGATACGACTCCTTCGACGTCG
AGGTCGGCACCTCCACGCTCGGCTCATCTGTCACCGTCACCTCGCTCAAGAAGGCCACCTTCTGACCACCGCCGGTCAAA
GTCTCCGGCGCCCGGTCATCTTATTTTCCGTCCTCTTCTTCTTCACTAAATATTTTAGTAGTATTAGTAATTTTTTCACT
CTGTATGGTGTGATCAATCAGCTTGTACGGATACGGAGTTGCACTGGTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8266.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis