Browse Element(s) Details


Os.8333.1.S1_at

Description gb:AK064791.1
DB_XREF= gi:32974809
TID=Os.8333.1
CNT=28
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8333 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000C08, full insert sequence.
FL= gb:AK064791.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1338011/11Endomembrane protein 70 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13340OsAffx.3223.1.S1_at11/113+7178091..7179239hypothetical protein
LOC_Os03g13350NANA3+7181451..7185948retrotransposon protein, putative, unclassified
LOC_Os03g13360OsAffx.3224.1.S1_at11/113+7188527..7189153hypothetical protein
LOC_Os03g13370OsAffx.25081.1.S1_at10/113+7190542..7198743TPR Domain containing protein, expressed
LOC_Os03g13370Os.6803.1.S1_at1/113+7190542..7198743TPR Domain containing protein, expressed
LOC_Os03g13380Os.8333.1.S1_at11/113+7202883..7207233Endomembrane protein 70 containing protein, expressed
LOC_Os03g13390Os.48057.1.S1_at11/113+7208077..7210783NADH-dependent oxidoreductase 1, putative, expressed
LOC_Os03g13400OsAffx.17040.2.S1_x_at11/113+7216429..7220531Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006944biological_processmembrane fusion
GO:0009524cellular_componentphragmoplast
GO:0016021cellular_componentintegral to membrane
GO:0005486molecular_functiont-SNARE activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8333.1.S1_at--1155--4931Chr03:7206660..7206684 (25 bp)
GCATTGTTCTTTGTCCGTCACATAT
LOC_Os03g13380
Os.8333.1.S1_at--400--6051Chr03:7206736..7206760 (25 bp)
GAGTTGTACTCCTTTTTGGTGCCAC
LOC_Os03g13380
Os.8333.1.S1_at--1129--7771Chr03:7206753..7206777 (25 bp)
GGTGCCACTAAGAAGTCCCAGTATA
LOC_Os03g13380
Os.8333.1.S1_at--672--51Chr03:7206815..7206839 (25 bp)
ATTGCCATGTTTCAGGTTAGGCCAT
LOC_Os03g13380
Os.8333.1.S1_at--684--2251Chr03:7206868..7206892 (25 bp)
AAATTTGTTCTCCTTTTGTGCGACT
LOC_Os03g13380
Os.8333.1.S1_at--339--3051Chr03:7206902..7206926 (25 bp)
AATCGTCTTTTCTTTGGTCATGTAA
LOC_Os03g13380
Os.8333.1.S1_at--695--751Chr03:7206921..7206945 (25 bp)
ATGTAATTCTCCCTGTGATGTCTAG
LOC_Os03g13380
Os.8333.1.S1_at--561--1891Chr03:7206954..7206978 (25 bp)
ACGTTGTTGATGCATGACCTACCTG
LOC_Os03g13380
Os.8333.1.S1_at--70--5852Chr12:23037254..23037281 (24 bp)
GACCTACCTGAGCATCTCTGGAAGA
NONE
Os.8333.1.S1_at--455--5891Chr03:7207052..7207076 (25 bp)
GAGCGGCTTGTCTATTTATACGTGT
LOC_Os03g13380
Os.8333.1.S1_at--875--4591Chr03:7207169..7207193 (25 bp)
GCGAAGCAGCTTCCAATGTGCAACT
LOC_Os03g13380
Target Sequence 
GCATTGTTCTTTGTCCGTCACATATACAAATCCATCAAGTGTGAGTAATACTGTTGTCAAAGGNCTGGAGAGCNAGCGGA
GTTGTACTCCTTTTTGGTGCCACTAAGAAGTCCCAGTATAGAAAAGGTTAGCTCTCGCNCAACAGGAGCAGCTAGAGATT
GCCATGTTTCAGGTTAGGCCATTATTCATAGGAACAGGTAATGAACCTATAAATTTGTTCTCCTTTTGTGCGACTGCTGT
GATAAATCGTCTTTTCTTTGGTCATGTAATTCTCCCTGTGATGTCTAGACATTTTCACGTTGTTGATGCATGACCTACCT
GAGCATCTCTGGAAGATCATGTCATGTCNTATTTCCTATAGCAGAATAACTGAAGTGTAGAGATGATGCCTCTAGAGCGG
CTTGTCTATTTATACGTGTACCCACCNGCTGGTTATGTATTGTCAAATATTGAAATACTGAACCATTCTTTTTTTTTCAC
TTTTGAGAATCATGATCACTTTGATTGATAGTGCGAAGCAGCTTCCAATGTGCAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8333.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis