Browse Element(s) Details


Os.8352.1.S1_at

Description gb:AK102406.1
DB_XREF= gi:32987615
TID=Os.8352.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8352 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033092L14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033092L14, full insert sequence.
FL= gb:AK102406.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0845011/11expressed protein
LOC_Os02g577403/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g08430NANA4+4516288..4519579retrotransposon protein, putative, unclassified
LOC_Os04g08440NANA4+4520206..4526359retrotransposon protein, putative, unclassified
LOC_Os04g08450Os.8352.1.S1_at11/114+4530762..4534703expressed protein
LOC_Os04g08460OsAffx.25927.1.S1_at11/114+4544331..4545799F-box domain containing protein
LOC_Os04g08470OsAffx.25928.1.S1_at10/114+4551546..4558566F-box domain containing protein
LOC_Os04g08470Os.5139.2.S1_x_at1/114+4551546..4558566F-box domain containing protein
LOC_Os04g08470Os.5139.2.S1_at1/114+4551546..4558566F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8352.1.S1_at--184--2432Chr04:4533580..4533604 (25 bp)
AAAATCCAGCAACCGAGGCAATTTT
LOC_Os04g08450
Os.8352.1.S1_at--990--4451Chr04:4533619..4533990 (25 bp)
GCTGCGAACGAGAGTAAACCTGACA
LOC_Os04g08450
Os.8352.1.S1_at--97--2391Chr04:4533991..4534015 (25 bp)
AAACTTGGAACTCCTACGCTGTGGA
LOC_Os04g08450
Os.8352.1.S1_at--372--8191Chr04:4534022..4534045 (24 bp)
GGAAGCATTTCAATCTTGTAAGCAT
LOC_Os04g08450
Os.8352.1.S1_at--742--10811Chr04:4534143..4534165 (23 bp)
TTGTAAGCATGAACCCCAATCCATC
LOC_Os04g08450
Os.8352.1.S1_at--92--6672Chr04:4534348..4534372 (25 bp)
GTTGCAGGTGATTCTGGGCTTCATC
LOC_Os04g08450
Os.8352.1.S1_at--704--8652Chr04:4534362..4534386 (25 bp)
TGGGCTTCATCCAGGCAGCAAAGAG
LOC_Os04g08450
Os.8352.1.S1_at--1058--2311Chr04:4534381..4534405 (25 bp)
AAAGAGGCTCAAGACCCTGTACCGC
LOC_Os04g08450
Os.8352.1.S1_at--54--9991Chr04:4534409..4534433 (25 bp)
TAGCCTGCTTCACAAAACCCTCAGT
LOC_Os04g08450
Os.8352.1.S1_at--901--2371Chr04:4534423..4534447 (25 bp)
AAACCCTCAGTGTGTAGATCTCAAG
LOC_Os04g08450
Os.8352.1.S1_at--1122--731Chr04:4534572..4534596 (25 bp)
ATGTAACCCCAAGTTCACACAGTGT
LOC_Os04g08450
Target Sequence 
AAAATCCAGCAACCGAGGCAATTTTNCACCCCAGTACAAAGCTGCGAACGAGAGTAAACCTGACAAAACTTGGAACTCCT
ACGCTGTGGAGATACTGGAAGCATTTCAATCTTGTAAGCATGAACCCCAATCCATCAAAGGAACAGCTCTTCCATGGGGT
CCAGCAGCATTTTCAGTCTCAGCAATTGGATGAGTTGCAGGTGATTCTGGGCTTCATCCAGGCAGCAAAGAGGCTCAAGA
CCCTGTACCGCTCCTAGCCTGCTTCACAAAACCCTCAGTGTGTAGATCTCAAGAAATTAGATGTTGTTCCTATGTGGTTA
AAATTAATCTAGTCTTGAGAGAGATGAACAGAAAAGAAGATAATTAGAGGTGCATTTGATGAGTAATTCTTTTTACTTTT
TACCTGTAATTGAGTTTATGTAACCCCAAGTTCACACAGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8352.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis