Browse Element(s) Details


OsAffx.25927.1.S1_at

Description tigr:9632.m00762
TID=OsAffx.25927.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0846011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g08430NANA4+4516288..4519579retrotransposon protein, putative, unclassified
LOC_Os04g08440NANA4+4520206..4526359retrotransposon protein, putative, unclassified
LOC_Os04g08450Os.8352.1.S1_at11/114+4530762..4534703expressed protein
LOC_Os04g08460OsAffx.25927.1.S1_at11/114+4544331..4545799F-box domain containing protein
LOC_Os04g08470OsAffx.25928.1.S1_at10/114+4551546..4558566F-box domain containing protein
LOC_Os04g08470Os.5139.2.S1_x_at1/114+4551546..4558566F-box domain containing protein
LOC_Os04g08470Os.5139.2.S1_at1/114+4551546..4558566F-box domain containing protein
LOC_Os04g08480Os.26886.6.S1_s_at10/114+4561625..4566710transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08480Os.26886.2.S1_s_at9/114+4561625..4566710transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08480OsAffx.16467.1.S1_at3/114+4561625..4566710transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08480OsAffx.22240.1.S1_x_at1/114+4561625..4566710transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08490Os.26886.1.S1_x_at5/114+4570653..4574004transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08490Os.26886.3.S1_x_at5/114+4570653..4574004transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25927.1.S1_at--641--5071Chr04:4545131..4545155 (25 bp)
GCAGCGGCGGTTGTCGATCGTCTAC
LOC_Os04g08460
OsAffx.25927.1.S1_at--252--4531Chr04:4545170..4545194 (25 bp)
GCCGCCATTGATCGAAAGCAGTTCC
LOC_Os04g08460
OsAffx.25927.1.S1_at--971--3491Chr04:4545203..4545227 (25 bp)
CATGATGTCCATGGGTGACGACGGC
LOC_Os04g08460
OsAffx.25927.1.S1_at--711--8111Chr04:4545257..4545281 (25 bp)
GGACGAGAAATTGTGCCTCCGTCTC
LOC_Os04g08460
OsAffx.25927.1.S1_at--233--9271Chr04:4545280..4545304 (25 bp)
TCCGATTACGCCTGTGGTCGAGGAA
LOC_Os04g08460
OsAffx.25927.1.S1_at--952--6571Chr04:4545395..4545419 (25 bp)
GATTCCCAGTAGTGTGCAGTTGCTC
LOC_Os04g08460
OsAffx.25927.1.S1_at--657--4251Chr04:4545424..4545448 (25 bp)
CCGTGGAGGGCACCGATGTCATCTT
LOC_Os04g08460
OsAffx.25927.1.S1_at--857--4771Chr04:4545477..4545501 (25 bp)
GCTGCTGTCTATATGGTCCAACTCA
LOC_Os04g08460
OsAffx.25927.1.S1_at--239--2291Chr04:4545531..4545555 (25 bp)
AAATGCACTTCAGTTGTTCCCTACA
LOC_Os04g08460
OsAffx.25927.1.S1_at--559--2711Chr04:4545557..4545700 (25 bp)
AAGCTTCTGCATTCCAGCTATGAGT
LOC_Os04g08460
OsAffx.25927.1.S1_at--357--7653Chr08:5668247..5668271 (25 bp)
GGGAGATACCACATTTTCTAGTGTA
NONE
Target Sequence 
GCAGCGGCGGTTGTCGATCGTCTACGGCCCGCCACGCCCGCCGCCATTGATCGAAAGCAGTTCCCCCATTTTCATGATGT
CCATGGGTGACGACGGCGTGCTGCGATGCGTCGAGGTGGAGCCGGAGGACGAGAAATTGTGCCTCCGTCTCCGATTACGC
CTGTGGTCGAGGAATGTGGATGACAACGGAGTCGCGCAGTGGATCAGGGGAAGGGCAATTGAGCTCGAGCCGCTACTCCC
CGATGGCGCCCTCCAAACTCCATGGATTCCCAGTAGTGTGCAGTTGCTCGGCGCCGTGGAGGGCACCGATGTCATCTTTG
TGGGCACACACTCGCCTGATCACCCTGCTGCTGTCTATATGGTCCAACTCAATTCAAGGAGGTCCAGGAAGGTGTTTGAC
AAATGCACTTCAGTTGTTCCCTACACAAGCTTCTGCATTCCAGCTATGAGTAATTTTACTATTCTTGATAAGGTATTGGG
AGATACCACATTTTCTAGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25927.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis