Browse Element(s) Details


Os.8382.1.S1_x_at

Description gb:AU095658
DB_XREF= gi:8858340
DB_XREF=AU095658
CLONE=S10036
TID=Os.8382.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.8382 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g432805/11aldehyde dehydrogenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43260OsAffx.20387.1.S1_x_at3/112+26051049..26056208retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43270OsAffx.31069.5.S1_at5/112+26056650..26061083retrotransposon protein, putative, unclassified
LOC_Os02g43270OsAffx.31069.5.S1_x_at3/112+26056650..26061083retrotransposon protein, putative, unclassified
LOC_Os02g43270Os.53479.1.S1_x_at3/112+26056650..26061083retrotransposon protein, putative, unclassified
LOC_Os02g43270OsAffx.26939.1.S1_at1/112+26056650..26061083retrotransposon protein, putative, unclassified
LOC_Os02g43280Os.10493.1.S1_at11/112+26073928..26079693aldehyde dehydrogenase family protein, expressed
LOC_Os02g43280Os.52279.1.S1_at10/112+26073928..26079693aldehyde dehydrogenase family protein, expressed
LOC_Os02g43280Os.8382.1.S1_s_at8/112+26073928..26079693aldehyde dehydrogenase family protein, expressed
LOC_Os02g43280Os.8382.1.S1_x_at5/112+26073928..26079693aldehyde dehydrogenase family protein, expressed
LOC_Os02g43290Os.18692.1.S1_at11/112+26084581..26086052Protein kinase domain containing protein, expressed
LOC_Os02g43300Os.13466.1.S1_at11/112+26093367..26096718expressed protein
LOC_Os02g43300OsAffx.12779.1.A1_x_at1/112+26093367..26096718expressed protein
LOC_Os02g43300OsAffx.2477.1.S1_x_at1/112+26093367..26096718expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009536cellular_componentplastid
GO:0004028molecular_function3-chloroallyl aldehyde dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8382.1.S1_x_at--884--7931Chr02:26079377..26079401 (25 bp)
GGATTATATACGGTTCTACCTTGTG
LOC_Os02g43280
Os.8382.1.S1_x_at--522--6551Chr02:26079378..26079402 (25 bp)
GATTATATACGGTTCTACCTTGTGT
LOC_Os02g43280
Os.8382.1.S1_x_at--955--10391Chr02:26079380..26079404 (25 bp)
TTATATACGGTTCTACCTTGTGTGA
LOC_Os02g43280
Os.8382.1.S1_x_at--872--10191Chr02:26079381..26079405 (25 bp)
TATATACGGTTCTACCTTGTGTGAT
LOC_Os02g43280
Os.8382.1.S1_x_at--25--4331Chr02:26079395..26079418 (24 bp)
CCTTGTGTGATGTGATAATGTATCC
LOC_Os02g43280
Os.8382.1.S1_x_at--1064--3611NONE
CTTGTGTGATGTGATAATGTATCCC
NONE
Os.8382.1.S1_x_at--447--7471NONE
GTGTGATGTGATAATGTATCCCTAT
NONE
Os.8382.1.S1_x_at--933--10771NONE
TTGTATTGTCCCGTTCTATGCCCTT
NONE
Os.8382.1.S1_x_at--675--8771NONE
TGTATTGTCCCGTTCTATGCCCTTA
NONE
Os.8382.1.S1_x_at--30--4311NONE
CCTAGCATTGTCTAGCGGGTTAAGT
NONE
Os.8382.1.S1_x_at--26--9971NONE
TAGCATTGTCTAGCGGGTTAAGTGT
NONE
Target Sequence 
GGATTATATACGGTTCTACCTTGTGTGATGTGATAATGTATCCCTATNCCTCNGTTGCATATTGTATTGTCCCGTTCTAT
GCCCTTANTTATTGTACCCTTTGGAAANAAAGGGNGGGATTGTTTTATTTTTTTTNAAAAAATGNCTAGNGGAAANNGGG
TGCNCCGACNTGTTATACATNAAAGNAGATNTGTAAANAGTTTNNGGGTGCTTTGGNNCCNCAGCANGGCCAANCCTAGC
ATTGTCTAGCGGGTTAAGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8382.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis