Browse Element(s) Details


Os.8385.2.S1_at

Description gb:AK061299.1
DB_XREF= gi:32971317
TID=Os.8385.2
CNT=89
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.8385 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative proline-rich protein (OSJNBa0031A07.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-301-E05, full insert sequence.
FL= gb:AK061299.1 gb:AK062795.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0600011/11proline-rich protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05970Os.37820.1.S1_x_at11/1110+2996967..2998098proline-rich protein, putative, expressed
LOC_Os10g05970Os.8385.1.S1_s_at11/1110+2996967..2998098proline-rich protein, putative, expressed
LOC_Os10g05970Os.8638.1.S1_s_at1/1110+2996967..2998098proline-rich protein, putative, expressed
LOC_Os10g05980Os.11398.1.S1_at11/1110+3001037..3002195proline-rich protein, putative, expressed
LOC_Os10g05990Os.10678.1.S1_at11/1110+3004849..3006285proline-rich protein, putative, expressed
LOC_Os10g05990Os.37820.1.S1_x_at1/1110+3004849..3006285proline-rich protein, putative, expressed
LOC_Os10g05990Os.8638.1.S1_s_at1/1110+3004849..3006285proline-rich protein, putative, expressed
LOC_Os10g06000Os.8385.2.S1_at11/1110+3015765..3016868proline-rich protein, putative, expressed
LOC_Os10g06000Os.8385.2.S1_x_at11/1110+3015765..3016868proline-rich protein, putative, expressed
LOC_Os10g06000Os.37820.1.S1_x_at1/1110+3015765..3016868proline-rich protein, putative, expressed
LOC_Os10g06000Os.8018.1.S1_x_at1/1110+3015765..3016868proline-rich protein, putative, expressed
LOC_Os10g06010OsAffx.20745.1.S1_at11/1110+3030618..3034372retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06020OsAffx.30308.1.S1_at11/1110+3037734..3038419hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8385.2.S1_at--796--4991Chr10:3016658..3016682 (25 bp)
GCATGTTTGATCATGCCGCAGATGA
LOC_Os10g06000
Os.8385.2.S1_at--668--3511Chr10:3016659..3016683 (25 bp)
CATGTTTGATCATGCCGCAGATGAT
LOC_Os10g06000
Os.8385.2.S1_at--457--9091Chr10:3016689..3016713 (25 bp)
TGCTCAGCACAGGAGTGTAATTTGT
LOC_Os10g06000
Os.8385.2.S1_at--537--9431Chr10:3016723..3016747 (25 bp)
TCGGGCATCAGCAGGGATGTTTGTA
LOC_Os10g06000
Os.8385.2.S1_at--678--8271Chr10:3016726..3016750 (25 bp)
GGCATCAGCAGGGATGTTTGTACTA
LOC_Os10g06000
Os.8385.2.S1_at--528--391Chr10:3016729..3016753 (25 bp)
ATCAGCAGGGATGTTTGTACTATTT
LOC_Os10g06000
Os.8385.2.S1_at--545--1531Chr10:3016732..3016756 (25 bp)
AGCAGGGATGTTTGTACTATTTGCA
LOC_Os10g06000
Os.8385.2.S1_at--922--2031Chr10:3016747..3016771 (25 bp)
ACTATTTGCATATTTTTCTCTCCCA
LOC_Os10g06000
Os.8385.2.S1_at--184--10212Chr10:3016749..3016773 (25 bp)
TATTTGCATATTTTTCTCTCCCAAA
LOC_Os10g06000
Os.8385.2.S1_at--731--10271Chr10:3016751..3016775 (25 bp)
TTTGCATATTTTTCTCTCCCAAATG
LOC_Os10g06000
Os.8385.2.S1_at--138--10731Chr10:3016752..3016776 (25 bp)
TTGCATATTTTTCTCTCCCAAATGA
LOC_Os10g06000
Target Sequence 
GCATGTTTGATCATGCCGCAGATGATGATCCTGCTCAGCACAGGAGTGTAATTTGTACTTGATTATCGGGCATCAGCAGG
GATGTTTGTACTATTTGCATATTTTTCTCTCCCAAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8385.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis